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498 results for “Columbia”
Columbia River spatial water chemistry
We mapped surface water chemistry along a ~600 km segment of the Columbia River. We used a sensor-based and boat-mounted sensing platform to continuously measure underway water chemistry. Measurements were linked with global positioning systems (GPS) to create maps of surface water chemistry. Data were collected over 6 days in July 2018 and include a single longitudinal survey of the Columbia River. Data have been provided in three formats (raw, hydraulic-corrected, and tau-corrected). Additionally, we archive laboratory chemistry data from water samples collected during the project. Sites include a range of main channel, backwaters, and tributaries. Water chemistry samples were analyzed at the North Temperate Lakes - Long Term Ecological Research facility and linked with underway sensor measurements.
Gene expression ATLAS of Arabidopsis thaliana (accession Columbia) across its lifecycle
<p><strong>Abstract: </strong>Arabidopsis thaliana (accession- Columbia) is an important model plant. RNA-Seq based study of 36 gene expression libraries was carried out to explore transcriptional programs operating in different plant parts (seedling, rosette, root, inflorescence, flower, fruit silique, and seed) and developmental stages (2-leaf stage, 6-leaf stage, 12-leaf stage, senescence stage, dry mature and imbibed seed stage). For each tissue type and developmental stage, three individual plants were used as biological replicates.</p> <div><strong><span>Organism part: </span></strong><span>inflorescence, whole plant, seed, root, silique fruit, flower, rosette</span></div> <div> </div> <div><span><strong>Developmental stage:</strong> </span><span>LP.02 two leaves visible stage, IL.00 inflorescence just visible stage, fruit size 30 to 50% stage, LP.12 twelve leaves visible stage, root development stage, fruit size 70% to final stage, LP.06 six leaves visible stage, dry seed stage, flowering stage, seed imbibition stage, sporophyte senescent stage, inflorescence development stage</span></div> <div> </div> <div> <div><strong><span>Organism: </span></strong><span>Arabidopsis thaliana</span></div> <div> </div> <div><span><strong>Ecotype:</strong> </span><span>Col-0</span></div> <div> </div> <div><strong><span>Genotype: </span></strong><span>wild type genotype</span></div> <div> </div> <div><span><strong>Age:</strong> Samples are from </span><span>20-day, 49-day, 39-day, 15-day, 21-day, 9-day, 22-day, 55-day, 26-day, 45-day</span></div> <div> </div> <div><span><strong><span>Experimental Designs: </span></strong><span>growth chamber study<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://purl.obolibrary.org/obo/EO_0007269" target="_blank" rel="noopener"> EFO</a></span>, <span>development or differentiation design<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0001746" target="_blank" rel="noopener"> EFO</a></span>, <span>organism part comparison design<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0001750" target="_blank" rel="noopener"> EFO</a></span></span></div> <div> </div> <div><span>For more description of the data and sample types see the file <a href="../api/records/11133989/draft/files/PRJEB24664_Sample_descriptors.xlsx/content" target="_blank" rel="noopener noreferrer">PRJEB24664_Sample_descriptors.xlsx or visit </a> or visit <a href="https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-6422/sdrf">https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-6422/sdrf</a></span></div> <div> </div> <div><span>Original data was submitted from </span></div> <div> <ul> <li><span>EMBL-EBI ArraExpress: <a href="https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-6422">https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-6422</a></span></li> <li><span>NCBI SRA: <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24664">https://www.ncbi.nlm.nih.gov/bioproject/PRJEB24664</a></span></li> </ul> <p><strong><span>Protocol description:</span></strong></p> <table> <tbody><tr> <th>Name</th> <th>Type</th> <th>Description</th> <th>Hardware</th> </tr> </tbody><tbody> <tr> <td>P-MTAB-71349</td> <td><span>growth protocol<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0003789" target="_blank" rel="noopener"> EFO</a></span></td> <td>Seeds were planted in pots containing commercial potting mix with fertilizers. Pots were covered with clear perforated plastic wrap and kept at 4 degrees celsius for 3 days to break the dormancy. After 3 days plants were transferred to the Intellus Ultra growth chamber (Percival Scientific, IA, USA) which was set to temperature 22-23 degrees celsius, light intensity 120-150 micromol/m2sec under the cycle of 16h light and 8h dark. Soil was kept moist by gently spraying with water every 72 hours to maintain humidity to 50-60%. Sampling time point is given in days after germination.</td> <td> </td> </tr> <tr> <td>P-MTAB-71350</td> <td><span>nucleic acid extraction protocol<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0002944" target="_blank" rel="noopener"> EFO</a></span></td> <td>Total RNA from frozen samples was extracted as a method described in Filichkin et al., 2010. Total RNA was used to isolate large RNA as per manufacturer's protocol for miRNeasy Mini kits (Qiagen Inc., USA), and RNase-free DNase (Life Technologies Inc., USA).</td> <td> </td> </tr> <tr> <td>P-MTAB-71351</td> <td><span>nucleic acid library construction protocol<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0004184" target="_blank" rel="noopener"> EFO</a></span></td> <td>True-Seq kit (Illumina Inc.) was used to prepare RNA-seq libraries, according to the manufacturer’s protocol.</td> <td> </td> </tr> <tr> <td>P-MTAB-71352</td> <td><span>nucleic acid sequencing protocol<a title="" href="https://www.ebi.ac.uk/ols4/ontologies/efo/terms?iri=http://www.ebi.ac.uk/efo/EFO_0004170" target="_blank" rel="noopener"> EFO</a></span></td> <td>101bp paired-end sequencing of mRNA was performed by using the standard protocols on Illumina HiSeq 3000.</td> <td>Illumina HiSeq 3000</td> </tr> </tbody> </table> </div> </div>
British Columbia and Alaska Motus Prioritization Tool Data
Addressing survival and movement of priority migratory avian species of concern along the Pacific Flyway is paramount for their conservation. Yet, the migratory life stage is understudied in many avian species. The Motus radiotelemetry receiver network is an established system for tracking survival and movement of avian species. This network is an international collaborative that successfully identifies stopover site duration, connected migratory routes, post-fledging dispersal and survival, and adult survival and fidelity on a landscape-scale; parameters that cannot be easily estimated using non-tagged birds. While the Motus network is highly connected in eastern North America, the western part of the continent is lagging in coverage and connectivity, limiting the ability to obtain sample sizes large enough to robustly model demographic parameters from tagged birds. Thus, the expansion of the Motus network is a high priority for Pacific Flyway State Agencies. To date, no method exists for determining priority locations for new Motus receiving stations. With collaborations from States and the Canadian Province of British Columbia, we used eBird citizen scientist data to prioritize strategic locations for new Motus receiving stations throughout the Pacific Flyway. We model priority species’ co-occupancy of varying abundance states (i.e., absent, present, abundant, abundant in multiple weeks) with spatially varying Landsat (red and near infrared), water, land cover types, and weather covariates while accounting for variable detection with temporally varying survey effort covariates. Using occupancy model predictions, we identify high-use areas of the Pacific Flyway for establishing new Motus receiving towers that have high probabilities of intercepting high presence and /or abundance of multiple species of interest in a series of predictive occupancy maps. This package contains all the necessary files to recreate the data analysis, print out maps based on predictions
Landslides from Space - Mocoa Debris Flow, Columbia (1st April 2017)
<p>More than 330 people died in a rainfall-triggered landslide which occured on 1st April 2017 in Mocoa, Columbia.<br> <br> The pre-event acquisition is from 13th February 2017 (Sentinel-2) and the post-event acquisition is from 4th April 2017 (Sentinel-2). A false colour composite with near-infrared, red and green band is visualised as RGB image.<br> <br> <em>Contains modified Copernicus Sentinel data (2017)</em></p>
Offshore British Columbia microseismicity
<p>Initial and relocations of microseismicity in the Queen Charlotte triple junction and Explorer microplate region offshore British Columbia, Canada from 1995-2021. These data include detections using the Regressive Estimator (REST) algorithm and those from network analysts at the Geological Survey of Canada (GSC). The files include earthquake locations, origin times, and P and S wave travel/arrival times. Centroid moment tensor solutions from the Geological Survey of Canada.</p> <p> </p> <p>1. comb_all_event_4pr_final.dat<br> All (63,566) 4-pair initial data (Unique GSC, REST, and matched events.)<br> Event header format:</p> <p>YYYY MM DD HH MM SC LAT LON DEP 0 0 0 0 ID</p> <p>2. phase_REST_initial_all.dat<br> Detections and locations for all REST events from 1995-2021. Excludes 9,929 events matched with the GSC.<br> Event header format:</p> <ol> <li>YYYY MM DD HH MM SC LAT LON DEP 0 0 0 0 ID<br> Phase detection format:<br> Station Traveltime Quality Phase</li> </ol> <p>3. phase_matchGSC_initial.dat<br> 9,929 events matched between REST-GSC detections from 1995-2021. Locations and phase detections from the GSC.<br> Event header format:</p> <ol> <li>YYYY MM DD HH MM SC LAT LON DEP 0 0 0 0 ID<br> Phase detection format:<br> Station Traveltime Quality Phase</li> </ol> <p>4. phase_GSC_initial_all_mag_ml.dat<br> 40,839 events from the GSC catalog from 1995-2021. Includes local (ML) magnitudes.<br> Event header format:</p> <ol> <li>YYYY MM DD HH MM SC LAT LON DEP MAG 0 0 0 ID<br> Phase detection format:<br> Station Traveltime Quality Phase</li> </ol> <p>5. hypreloc_fix5_4pr_all.reloc<br> 18,441 final hypoDD relocations in hypoDD file format.</p> <p>6. PGC_CMT.tgz<br> .tgz file includes Geological Survey of Canada centroid moment tensor solutions and associated README file.</p>
Data from: Development of Single Nucleotide Polymorphism (SNP) Panel for determination of environmental influence on genome for wild Columbia River redband trout (Oncorhynchus mykiss gairdnerii) in Southwest Idaho streams
<p>DNA were derived from fin tissue samples taken from individual trout captured from Little Jacks Creek, Big Jacks Creek , and Duncan Creek of the Owyhee mountains and Keithly Creek and Upper Mann Creek in the Hitt mountains of Western Idaho, United States. Fin tissues were collected from individual trout from each stream during monthly sampling events in June through October 2020. </p> <p><em>DNA Extraction:</em> Extraction of DNA from caudal fin tissues were performed using Quick-DNA Miniprep Plus purification kits (Zymo Research Inc.©). Small sections of fin tissue (≤ 25 mg) were collected from each sample. This was mixed with a digesting solution comprised of ultra-pure water, solid tissue buffer (Zymo Research Inc.©) and proteinase K. All tissues were digested in sealed microcentrifuge tubes for at minimum 3 h at 55°C in a water bath. We then aliquoted 100 µL of digestion supernatant and combined with 200 µL of genomic binding buffer (Zymo Research Inc.©). DNA was eluted in 50, 75, and 100 µL of elution buffer to determine which volume provided sufficient DNA concentration for genotyping. After it was determined all quantities produced suitable concentrations, going forward, 50 µL of elution buffer used.</p> <p><em>Genotyping:</em> Following extraction, genotyping-in-thousands sequencing took place at the Hagerman National Fish Hatchery’s genetics research facility with the assistance of the Columbia River Intertribal Fish Commission (CRTFC). Genotyping protocols were as described in Campbell et al. (2015) and summarized below. First, samples were prepared for amplification via PCR by combining DNA extracts with a Qiagen Plus multiplex master mix and a species-specific pooled primer mix. This step added the Illumina sequencing primer sites to amplicons. Following the creation of the PCR cocktail, thermocycling was conducted for amplification. Amplified samples were then diluted 20-fold. Diluted samples were transferred to new 96-well PCR plates where two genetic indexes and barcodes provides a unique set of tagging primers to each well and plate. Tagged plates then underwent a second PCR step. After the second PCR, all DNA were transferred to Charm Biotech normalization plates where DNA was bound to wells, washed, and finally eluted. After normalization, all DNA was pooled together and a purification step using magnetized beads in two steps to selectively remove fragments of DNA that are both too large and too small for sequencing. Following purification, each plate was quantified via qPCR using Life Technologies QuantStudio 6 Flex Instrument (Life Technologies). Finally, sequencing was performed using an Illumina HiSeq 1500 instrument.</p> <p><strong>Ancillary peer-reviewed manuscripts:</strong><br> <em>Genotyping protocols</em><br> Campbell NR, Harmon SA, Narum SR. 2015. Genotyping-in-Thousands by sequencing (GT-seq): A cost effective SNP genotyping method based on custom amplicon sequencing. Mol Ecol Resour, 15: 855-867. https://doi.org/10.1111/1755-0998.12357<br> <em>SNP loci reference</em><br> Collins EE, Hargrove JS, Delomas TA, Narum SR. 2020. Distribution of genetic variation underlying adult migration timing in steelhead of the Columbia River basin. Ecology and Evolution, 10(17): 9486-9502. https://doi.org/10.1002/ece3.6641 </p> <p><strong>Data Use</strong>:<br> <em>License</em>: <a href="https://creativecommons.org/licenses/by/4.0/">CC-BY 4.0</a> <br> <em>Recommended Citation</em>: Wooding AP, Narum SR, Pradhan DS. 2022. Data from: Development of Single Nucleotide Polymorphism (SNP) Panel for determination of environmental influence on genome for wild Columbia River redband trout (Oncorhynchus mykiss gairdnerii) in Southwest Idaho streams (0.1) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7055582</p> <p>Funding for this project is provided by US National Science Foundation and Idaho EPSCoR through award: OIA-1757324 </p>
CLDF dataset derived from Tolmie and Dawson's "Comparative Vocabulary of the Indigenous Peoples in British Columbia" from 1884
<p>Cite the source of the dataset as:</p> <blockquote> <p>Tolmie, Fraser W. and Dawson, George M. (1884). Comparative vocabularies of the Indian tribes of British Columbia, with a map illustrating distribution. Montreal: Dawson Brothers.</p> </blockquote>
Seismicity catalog of hydraulic-fracturing-induced earthquakes in the Kiskatinaw area, northeast British Columbia
<p>Seismicity catalog of 8,731 hydraulic-fracturing-induced earthquakes in the Kiskatinaw area, northeast British Columbia between 1 July 2017 to 31 Dec 2020. The Study area covers the Kiskatinaw area, wich extends over parts of the Montney Formation, a major shale gas play within the Western Canada Sedimentary Basin. Catalog corresponds to:</p> <p>Roth, M. P., A. Verdecchia, R. M. Harrington, and Y. Liu (2020). High-Resolution Imaging of Hydraulic-Fracturing-Induced Earthquake Clusters in the Dawson-Septimus Area, Northeast British Columbia, Canada, Seismol. Res. Lett. 91, 2744–2756, doi: 10.1785/0220200086.</p>
Dataset from University of Idaho 2004, master's thesis [Littoral ecology of epilithic algae in the Rocky Reach Pool, Mid-Columbia River (Washington State) - The effects of reservoir fluctuations.]
(Abstract from thesis) Epilithic algae, water column physical/chemical properties, and sediments were examined in the impounded Mid-Columbia River including the Rocky Reach Reservoir. Primary objectives included determination of the effects reservoir drawdown has on epilithic algae and potential nutrient enrichment via sediment. Epilithic algae were analyzed by pigment concentration, gravimetrically, and species composition. Reservoir elevation fluctuated at higher rates at tailrace sites (0.41-0.25 m/hr) compared to the forebay site (0.06-0.08 m/hr). Littoral exposure times were also greater at tailrace sites (mean of 8 hrs compared to 0 hr at the forebay site). Mean epilithic algae monochromatic chlorophyll a over all sampling periods at mainstem sites was 76.7 ± 4.8 mg/m2 (95 % C.I.). Epilithic algae monochromatic chlorophyll a in the zone of water fluctuation (0-1 m) was less at Wells tailrace (38.8 mg/m2) compared to Rocky Reach forebay (141.3 mg/m2) during summer, 2000 and 2001. Mean epilithic biofilm ash-free oven-dry weight over all sampling periods at mainstem sites was 25.6 ± 1.5 g/m2 (95 % C.I.). Mean autotrophic index across all mainstem locations was 439 indicating a large heterotrophic component within the epilithic biofilms. Epilithic algae communities were dominated by diatoms (50.2 %) and cyanobacteria (35.9 %), with some green algae (13.8 %). Canonical correlation analysis indicated that temperature, depth, site, and the water elevation change rate were important controllers of epilithic algae chlorophyll pigments. Mean textural characteristics of dredged sediment were 51.1 % sand, 43.2 % silt, and 5.7 % clay. Mean organic matter content in this sediment was 4.1 %. The mean seston sedimentation rate across mainstem locations was 11.3 g m-2 d-1 and organic matter comprised 14.7 % of the material collected from the water column.
Figure 2. Collection sites A-D. Site A in Survey of rove beetles (Coleoptera, Staphylinidae) from Stanley Park, Vancouver, British Columbia, Canada, with new records and description of a new species. Part 2
Figure 2. Collection sites A-D. Site A: Aquarium (2007). Site B: Hollow Tree/Rawlings Trail (2007). Site C: South Creek Trail (2008). Site D: Merilees Trail (2008).
Figure 1 in Survey of rove beetles (Coleoptera, Staphylinidae) from Stanley Park, Vancouver, British Columbia, Canada, with new records and description of a new species. Part 2
Figure 1. Map of Stanley Park, Vancouver, British Columbia, showing collecting locations for the 2007 and 2008 insect surveys.
Figures 3–5. Sonoma squamishorum. Scale line equals 0.1 in Survey of rove beetles (Coleoptera, Staphylinidae) from Stanley Park, Vancouver, British Columbia, Canada, with new records and description of a new species. Part 2
Figures 3–5. Sonoma squamishorum. Scale line equals 0.1 mm: 3 ventral view male genitalia 4 ventral view male sternite 6 5 ventral view female sternites 6–7.
Columbia River headwaters - hydroclimate and glacier change, 1977-2017
<p>These data files were used in the production of a manuscript titled "Detecting the effects of sustained glacier wastage on streamflow in variably glacierized catchments" by R.D. Moore, B. Pelto, B. Menounos and D. Hutchinson.</p> <p>cb_shapes - polygons of catchment boundaries for the catchments included in the analysis</p> <p>cq.csv - streamflow and climatic data used in regression and trend analyses within the script "cbt_aug_flow_analysis.r"</p> <p>good_stn.csv - contains station IDs for Water Survey of Canada stations that met selection criteria</p> <p>stn_info.csv - catchment characteristics for Water Survey of Canada stations included in the analysis</p> <p>cbt_metadata.xlsx - full metadata for catchments used in the analysis</p> <p>*.r - R scripts used to conduct analyses and generate figures</p> <p> </p>
Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia
<p>Microsatellite loci calls, sex, and mean centre detection per individual (GrizzlyMicroLociMeanXY.csv) and code associated with the paper: "Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia". All code is from published R packages or GitHub repositories not created by the author. Code used is best described in these alternate resources. </p>
Figure 5 in A New Stenothoid (Crustacea: Amphipoda: Stenothoidae) from a Shallow Water Hydroid Polyp in British Columbia, Canada
Figure 5. Metopa insolita sp. nov., male holotype, ZMBN 104469: (A) pereopod 5; (B) pereopod 6; (C) pereopod 7; (D) epimeral plates 2–3; (E) telson. Scale 0.1 mm.
Figure 3 in A New Stenothoid (Crustacea: Amphipoda: Stenothoidae) from a Shallow Water Hydroid Polyp in British Columbia, Canada
Figure 3. Metopa insolita sp. nov., male holotype, ZMBN 104469: (A) gnathopod 1; (B) gnathopod 2. Scale 0.1 mm.
Figure 4 in A New Stenothoid (Crustacea: Amphipoda: Stenothoidae) from a Shallow Water Hydroid Polyp in British Columbia, Canada
Figure 4. Metopa insolita sp. nov., male holotype, ZMBN 104469: (A) pereopod 3; (B) pereopod 4. Scale 0.1 mm.
Figure 1 in A New Stenothoid (Crustacea: Amphipoda: Stenothoidae) from a Shallow Water Hydroid Polyp in British Columbia, Canada
Figure 1. (A) Metopa insolita sp. nov. sitting on polyp of Zyzzyzus rubusidaeus Brinckmann-Voss & Calder, 2013 (Photo: Neil McDaniel); (B) habitus photo of paratype of Metopa insolita sp. nov. (Photo: A. H. S. Tandberg).
Figure 2 in A New Stenothoid (Crustacea: Amphipoda: Stenothoidae) from a Shallow Water Hydroid Polyp in British Columbia, Canada
Figure 2. Metopa insolita sp. nov., male holotype, ZMBN 104469: (A) habitus; (B) head with antennae; (C) maxilla 1; (D) mandible; (E) maxilla 2. Scale: A = 1 mm; B–E = 0.1 mm.
Text-fig. 8. Ulmaceae a–e, Rosaceae f–l. a: Cedrelospermum, leaflet missing base but showing simple teeth, UAPC-ALTA S 25748. b: Ulmus with prominent teeth, asymmetric base, BBM-PAL-P000015. c: Ulmus leaf with prominent teeth, UAPC-ALTA S 59506. d: Ulmus fruit, UAPC-ALTA S 6590. e: Basal half of Ulmus leaf showing the obtuse teeth with subbasal entry of veins to the teeth, UAPC-ALTA S 59517. f: cf. Rubus, UAPC-ALTA S 67691. g. Prunus leaf, UAPC-ALTA S 25746. h: cf. Hesperomeles UAPC-ALTA S 67692. i: Photinia pagae, UAPC-ALTA S 67693. j: cf. Prunus, detail from g. k: Rosaceous leaf, UAPC-ALTA S 59501. l: Rosaceae, possibly Kerriae. BBM-PAL-P000047. Scale bars: a, f, i, k, l = 2 cm; b–e, g, h, j = 1 cm. in The Early Eocene Flora Of Horsefly, British Columbia, Canada And Its Phytogeographic Significance
Text-fig. 8. Ulmaceae a–e, Rosaceae f–l. a: Cedrelospermum, leaflet missing base but showing simple teeth, UAPC-ALTA S 25748. b: Ulmus with prominent teeth, asymmetric base, BBM-PAL-P000015. c: Ulmus leaf with prominent teeth, UAPC-ALTA S 59506. d: Ulmus fruit, UAPC-ALTA S 6590. e: Basal half of Ulmus leaf showing the obtuse teeth with subbasal entry of veins to the teeth, UAPC-ALTA S 59517. f: cf. Rubus, UAPC-ALTA S 67691. g. Prunus leaf, UAPC-ALTA S 25746. h: cf. Hesperomeles UAPC-ALTA S 67692. i: Photinia pagae, UAPC-ALTA S 67693. j: cf. Prunus, detail from g. k: Rosaceous leaf, UAPC-ALTA S 59501. l: Rosaceae, possibly Kerriae. BBM-PAL-P000047. Scale bars: a, f, i, k, l = 2 cm; b–e, g, h, j = 1 cm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.