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22 results for “Computational anatomy”
Computing the Committor with the Committor: an Anatomy of the Transition State Ensemble
<p>The study of the kinetic bottlenecks that hinder the rare transitions between long-lived metastable states is a major challenge in atomistic simulations. We propose a method to explore the transition state ensemble, which is the distribution of configurations that the system passes as it translocates from one metastable basin to another. We base our method on the committor function and the variational principle to which it obeys. We find its minimum through a self-consistent procedure that starts from information limited to the initial and final states. Right from the start, our procedure allows sampling very many transition state configurations. With the help of the variational principle, we perform a detailed analysis of the transition state ensemble, ranking quantitatively the degrees of freedom mostly involved in the transition and enabling for a systematic approach for the interpretation of simulation results and the construction of efficient physics-informed collective variables.</p>
Dataset for paper "Motoneuron-driven computational muscle modelling with motor unit resolution and subject-specific musculoskeletal anatomy"
<p>This dataset collects all the material that was used to create the personalised musculoskeletal model employed in the publication by Caillet et al. "Motoneuron-driven computational muscle modelling with motor unit resolution and subject-specific musculoskeletal anatomy" published in PLOS Computational Biology in 2023. The aim of sharing this material is to allow reproducibility of the results and increase adoption of the semi-automatic techniques for musculoskeletal modelling that were used in the publication.</p>
Figure 15 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 15. Computed tomography slices of the maxillary and dentary tooth rows of ºAM-PK-6536, Mesosuchus browni, showing intermedate condition of tooth implantation and arrangement. A, sagiưal section of less maxilla; B, transverse section of right maxilla; C, transverse section of right dentary. Dashed yellow line indicates region of seperation between tooth base and alveolar bone of the maxilla.
Figure 14 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 14. Strict consensus tree calculated from our re-analysis of the character matrix constructed by Ezcurra et al. (2016), with adjusted scorings for Mesosuchus browni. Mesosuchus browni is presented in red text, and the clades Rhynchosauria and Rhynchosauridae are labelled.
Figure 13 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 13. Strict consensus tree calculated from our re-analysis of the character matrix constructed by Scheyer et al. (2020) with adjusted scorings for Mesosuchus browni. Mesosuchus browni is presented in red text, and the clades Rhynchosauria and Rhynchosauridae are labelled.
Figure 10 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 10. Digitally isolated left mandible of SAM-PK-6536, Mesosuchus browni, in: A, lateral; B, medial; C, ventral; D, anterior; and E, posterior views.
Figure 12 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 12. Internal anatomy of left dentary and splenial of SAM-PK-6536, Mesosuchus browni: A, left dentary in lateral view; B, left dentary in dorsal view; C, left dentary in anterior view; D, left splenial in anterior view; E, left splenial in posterolateral view; F, left splenial in medial view.
Figure 11 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 11. Internal anatomy of the left maxilla and right jugal of SAM-PK-6536, Mesosuchus browni: A, left maxilla in lateral view; B, left maxilla in anterior view; C, left maxilla in medial view; D, left maxilla in posterior view; E, right jugal in dorsal view; F, right jugal in lateral view; and G, right jugal in anterior view.
Figure 2 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 2. Schematic tree displaying the generally accepted phylogenetic relationships of the taxa we use for general comparisons in our description of Mesosuchus browni.
Figure 9 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 9. Digitally isolated septomaxilla of SAM-PK-6536, Mesosuchus browni, in coronal section: A, through centre of Jacobson's chamber in posterolateral view; and B, through vomer in posterior view.
Figure 7 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 7. Digitally isolated palatal region of SAM-PK-6536, Mesosuchus browni, in: A, dorsal; B, posterior; and C, medial views.
Figure 8 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 8. Digitally isolated palatal complex of SAM-PK-6536, Mesosuchus browni, in: A, dorsal; B, right lateral; and C, anterior views.
Figure 3 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 3. Digitally segmented skull of SAM-PK-6536, Mesosuchus browni, in: A, right lateral; B, left lateral; C, anterior; and D, posterior views.
Figure 1 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 1. Volume renderings of the skull of SAM-PK-6536, Mesosuchus browni, in: A, left lateral; B, right lateral; C, ventral; D, dorsal; E, posterior; and F, anterior views.
Figure 5 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 5. Digitally isolated rostrum and orbital bones of SAM-PK-6536, Mesosuchus browni, in: A, medial; B, anterolateral; and C, posterior views.
Figure 4 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 4. Digitally segmented skull of SAM-PK-6536, Mesosuchus browni, in: A, dorsal; and B, ventral views.
Figure 6 in Cranial anatomy of the Triassic rhynchosaur Mesosuchus browni based on computed tomography, with a discussion of the vomeronasal system and its deep history in Reptilia
Figure 6. Digitally isolated skull roof bones of SAM-PK-6536 in ventral view.
Data from: A computational analysis of locomotor anatomy and body mass evolution in Allosauroidea (Dinosauria Theropoda)
Open the record for dataset details and reuse information.
Influence of Tracheal-bronchial Anatomy Changes on Multi-detector Computed Tomography Scan of the Chest Upon Placement of Left-Sided Double Lumen Endotracheal Tube
ClinicalTrials.gov study NCT03838653. IPD Sharing: YES. Countries: 1. Publications: 0.
Computational Anatomy in Surgery for Childhood Tumours and Malformations
ClinicalTrials.gov study NCT06224985. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.