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18 results for “Computer taxonomy”
The efficacy of X-ray micro-computed tomography for acorn worm taxonomy: Balanoglossus occidentalis (manuscript species) from Puget Sound, Washington
<p>Micro-CT scan data of Balanoglossus occidentalis generated with a Zeiss Xradia Versa 520. A first scan was made of the whole specimen with AMC drift correction, 0 beam hardening, voltage of 60 kV, currant of 82 µA, exposure time of 1.7 sec, LE2 source filter, LE6 secondary filter, 1601 Projection numbers, single FOV, vertical stitching and a resolution of 9,0373 µm. Then, a second scan was made focusing on the collar and the base of the proboscis because these regions are particularly informative to taxonomic descriptions of acorn worms. This second scan had a Projection number of 2401 and a resolution of 4.5075 µm. Each scan took 3 hours.</p>
A Code Token Type Taxonomy-enhanced dataset with pre-computed token types for Python150k
<p>Code Token Type Taxonomy (CT3) is a methodology for refined evaluation of ML-based code completion approaches.</p> <p>We published the CT3-enhanced dataset with pre-computed token types for each token in the <a href="https://www.sri.inf.ethz.ch/py150">Python150k dataset</a>.</p> <p>The dataset was obtained from an empirical study of the below paper:</p> <p>Kim Tuyen Le, Gabriel Rashidi, and Artur Andrzejak. A Methodology for Refined Evaluation of ML-based Code Completion Approaches. In <em>Special Issue on Programming Language Processing, Data Mining and Knowledge Discovery</em>.</p> <p>Please read the README.txt file for detailed information of structuring the enhanced dataset.</p>
Figure 1 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 1 - Lumbrineris latreilli, a false-colour volume rendering of the anterior region, dorso-lateral view, specimen partly covered by a thin film of ethanol b surface model of the vascular system (yellow) and brain (purple) superimposed on volume rendering of the worm, dorso-anterior view c false-colour, semi-transparent volume rendering of the anterior region, dorsal view d volume rendering of virtually dissected anterior region, lateral view.
Figure 10 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 10 - Phyllodoce lineata, a false-colour volume rendering of anterior region, dorso-lateral viewb false-colour volume rendering of virtually dissected distal end of partly everted pharynx, focusing on terminal pharyngeal papillae, anterior view c transaxial cross section at eye level d volume rendering of virtually dissected anterior region showing the brain, dorso-posterior view e same, in stereo view (3D effect is revealed when viewed with red-cyan glasses).
Figure 11 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 11 - a Phyllodoce lineata, volume rendering of a anterior end, virtually dissected behind prostomial region, posterior view b Phyllodoce sp., volume rendering of virtually dissected pharynx, dorsal view c Phyllodoce sp., virtual dissection of distal pharyngeal subdivision with large papillae, anterior view d Phyllodoce sp., virtual dissection of proximal pharyngeal subdivision with small papillae, antero-lateral view.
Figure 12 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 12 - Syllis gracilis, false-colour volume rendering of a anterior region, anterior view b anterior region virtually dissected at pharyngeal level, posterior view c virtually dissected anterior region showing the brain, anterior view d virtually dissected region in front of proventricle, dorsal view; e) mid-body parapodia, posterior-lateral view.
Figure 15 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 15 - Hermodice carunculata, false-colour volume rendering of a anterior region, antero-dorsal view b virtually dissected anterior end showing pharyngeal structures, lateral view c virtually dissected anterior end, lateral view d virtually dissected anterior end at level of mouth opening, anterior view.
Figure 9 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 9 - Alitta succinea, a normal view and b stereo view of volume-rendering of anterior region, lateral view (3D effect is revealed when viewed with red-cyan glasses) c coronal cross section of anterior region depicting areas of insufficient tissue staining with PTA. Black areas in pharyngeal region remained unstained and information is lost d dorsal view and e posterior-lateral view of false-colour volume rendering of virtually dissected anterior region f volume rendering of anterior region, dorsal view.
Figure 4 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 4 - Lumbrineris latreilli, volume rendering of a anterior regionwith maxillary apparatus superimposed as a surface model, dorsal view b virtually dissected jaw apparatus, ventral view with mandibles partly removed c same, dorsal view.
Figure 5 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 5 - Eunice sp., false-colour volume renderings (colours indicate relative densities: blue: low, green: medium, red: high) of a iodine-stained specimen, ventral view b PTA-stained specimen, ventral view c false-colour volume rendering of virtually dissected maxillary apparatus (iodine-stained individual), dorso-lateral view.
Figure 13 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 13 - Syllis gracilis, cross sections, a coronal view showing prostomium, palps and posterior eye pair b transaxial view at level of pharyngeal opening, showing papillae around pharyngeal opening c dorsal view, pharyngeal opening and pharyngeal tooth. Double lines at borders of cirri are artefacts resulting from either movement of specimen during the scan or from settings during dataset reconstruction.
Figure 7 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 7 - Eunice roussaei, mid-body parapodium, a cross section through parapodial base b semi-transparent volume rendering c opaque volume rendering d volume rendering of chaetae.
Figure 16 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 16 - Diagram of the image acquisition process from the choice of method to the final presentation of the data, including factors influencing the outcome and information value of the results.
Figure 1 from: Samyn Y, Sonet G, d'Acoz C (2021) Exploring the use of micro-computed tomography (micro-CT) in the taxonomy of sea cucumbers: a case-study on the gravel sea cucumber Neopentadactyla mixta (Östergren, 1898) (Echinodermata, Holothuroidea, Phyllophoridae). ZooKeys 1054: 173-184. https://doi.org/10.3897/zookeys.1054.67088
Figure 1 Neopentadactyla mixta (Östergren, 1898) A focus-stacked view of the dorsal-lateral view of dissected specimen B focus-stacked view of the ventral–lateral view of dissected specimen C focus-stacked view of the dorsal–lateral view of a non-dissected specimen D focus-stacked view of the ventral–lateral view of a non-dissected specimen ESEM view of the rosettes from the shaft of a tentacle FSEM view of the 2-pillared tables from the introvert GSEM view of the rods and rosettes from a tentacle tip HSEM view of the 4-pillared tables from the dorsal body wall ISEM view of the 4-pillared tables from the ventral body wall JSEM view of the plates from the dorsal tube feet KSEM view of the plates from the ventral tube feet LSEM view of half of an end-plate from a ventral tube foot. Scale bars: 1 cm (A–D); 50 μm (E–L).
Figure 2 from: Samyn Y, Sonet G, d'Acoz C (2021) Exploring the use of micro-computed tomography (micro-CT) in the taxonomy of sea cucumbers: a case-study on the gravel sea cucumber Neopentadactyla mixta (Östergren, 1898) (Echinodermata, Holothuroidea, Phyllophoridae). ZooKeys 1054: 173-184. https://doi.org/10.3897/zookeys.1054.67088
Figure 2 Neopentadactyla mixta (Östergren, 1898) A micro-CT scan visualizing the position of the calcareous ring B lateral view with micro-CT imaging of the anterior part of the calcareous ring (AR: most anterior radial piece; AIR: most anterior interradial pieces; SAR: subsequent anterior radial pieces; SAIR: subsequent interradial anterior pieces; Mesh: meshwork of radial and interradial median to distal pieces) C oblique view with micro-CT imaging showing a guttered internal side of the calcareous ring D focus-stacked view of the calcareous ring and associated structures (T: tentacles; LM: longitudinal muscle with bifurcation point (BfP); PV: Polian vesicle: SC: stone canal). Scale bars: 1 cm (A–D).
Data from: Micro-computed tomography: introducing new dimensions to taxonomy
Open the record for dataset details and reuse information.
Figure 6 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 6 - Eunice sp., transaxial cross section at mid-body (iodine-stained individual).
Figure 14 from: Faulwetter S, Vasileiadou A, Kouratoras M, Dailianis T, Arvanitidis C (2013) Micro-computed tomography: Introducing new dimensions to taxonomy. ZooKeys 263: 1-45. https://doi.org/10.3897/zookeys.263.4261
Figure 14 - Syllis gracilis, false-colour volume rendering of virtually dissected proventricle.
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