Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
65
datasets available to search
ShareScore release 0.9.0
Dataset results
65 results for “Core complex”
Supporting information for: An assessment of monazite fission-track thermochronology as a proxy for low-magnitude cooling, Catalina-Rincon Metamorphic Core Complex, AZ, U.S.A.
<p><span>The following supporting information contains: The detailed location and age data for the geochronological, isotopic, and geochemical data used in this study, and their associated publications. Detailed thermochronometric data and associated thermal history modelling information for all thermochronology and modelling presented in the study.</span></p>
Fig. 2 in Predictive distribution modelling for rufous-necked hornbill Aceros nipalensis (Hodgson, 1829) in the core area of the Western Forest Complex, Thailand
Fig. 2. Diagram showing the conceptual framework used to model the distribution of the rufous-necked hornbill in the Western Forest Complex (WEFCOM), Thailand.
Fig. 1 in Predictive distribution modelling for rufous-necked hornbill Aceros nipalensis (Hodgson, 1829) in the core area of the Western Forest Complex, Thailand
Fig. 1. Map of research locations showing the study areas where the point counts were conducted along14 line-transects, using a hand-held GPS to accurately measure the count locations or extent and position of evergreen forest where the RNH lives, in order to predict RNH distribution.
Fig. 3 in Predictive distribution modelling for rufous-necked hornbill Aceros nipalensis (Hodgson, 1829) in the core area of the Western Forest Complex, Thailand
Fig. 3. Presence-absence binary models for RNH distributions after introducing equal sensitivity-specific threshold values to the continuous MaxEnt model based on the smallest home range size of the male RNH #15, as derived from Tifong (2007), during: a, the breeding season; b, the non-breeding season; and c, showing the combined habitat classification.
Meningococcal core and accessory phasomes vary by clonal complex
<p><em>Neisseria meningitidis </em>are Gram-negative human commensal-pathogens, with extensive phenotypic plasticity afforded by phase variable gene expression. Phase variation is a stochastic switch in gene expression from an ON to an OFF state, mediated by localised hypermutation of simple sequence repeats. Circulating <em>N. meningitidis </em>clones vary in propensity to cause disease with some clonal complexes classified as hypervirulent and others as carriage-associated. We examined the phase-variable gene repertoires, or phasome, of these lineages in order to determine if phase variation contributes to disease propensity. We analysed 3,328 genomes representative of nine circulating meningococcal clonal complexes with Phasome<em>It</em>, a tool which identifies phase-variable genes by the presence of simple sequence repeats (SSR) and homologous gene clusters. Presence, absence and functions of all identified phase-variable gene clusters were confirmed by annotation or BLAST searches within the Neisseria pubMLST database. While no significant differences were detected in the number of phase-variable genes or the core, conserved phasome content between hypervirulent and carriage lineages, individual clonal complexes exhibited major variations in phase-variable gene numbers. Phylogenetic clusters produced by phasome or core genome analyses were similar indicating co-evolution of phase-variable genes with the core genome. While conservation of phase-variable clusters is high, with 76% present in all meningococcal isolates, maintenance of an SSR is variable ranging from conserved in all isolates to present only in single clonal complexes, indicating differing evolutionary trajectories for each lineage. Diverse functional groups of PV genes were present across the meningococcal lineages, however, the majority directly or indirectly influence bacterial surface antigens and could impact on future vaccine development. Finally, we observe that meningococci have open pan phasomes, indicating on-going evolution of PV gene content and a significant potential for adaptive changes in this clinically relevant genus.</p>
Ent1-mNeonGreen and Abp1-mTq TIRF Raw data from "Sla2 is a core interaction hub for Clathrin Light Chain and the Pan1/End3/Sla1 Complex"
<p>This dataset is raw TIRF movies (as ND2 files) of data shown in Figure 4e of the manuscript "Sla2 is a core interaction hub for Clathrin Light Chain and the Pan1/End3/Sla1 Complex" in BioXiv (https://doi.org/10.1101/2024.11.14.623549) </p> <p><br>In this repository, you will find 20 different movies taken over two microscopy sessions for Ent1-mNeonGreen/Abp1-mTurquoise2 for yeast cells expressing Sla2-WT and two different mutants (called Site1 and Site2 mutants). </p> <p><br>How is it called in the repository / In the manuscript<br>Sla2-WT - Sla2 - WT<br>Sla2-dYYR - Sla2 - ΔSite2<br>Sla2-d515 - Sla2 - ΔSite1</p> <p>Data relating to experimental conditions can be found in https://doi.org/10.1101/2024.11.14.623549</p>
Simulated complex structures of the h-FBP21 tandem WW domain with proline-rich ligand extracted from SmB/B' core-splicing protein
<p>The tandem WW domain of the human formin-binding protein 21 (h-FBP21 tWW) consists of two WW domains separated by a flexible linker. It can bind target sequences in two different orientations and the flexibility of the linker additionally allows the two WW domains to adopt various relative orientations to each other. As consequence, the elucidation of possible complex structures for the h-FBP21 tWW is very challenging.</p> <p>Here, we present two complex structures for the h-FBP21 tWW and a proline-rich sequence from its natural binding partner, the core-splicing protein SmB/B’. Showing parallel (‘6’) and antiparallel (’14’) binding orientation, the two structures also differ in the relative positioning of the WW domains.</p> <p>For further instructions regarding the files, please refer to ‘README’.</p>
Speos: An ensemble graph representation framework to predict core genes for complex diseases (Datasets)
<p>the "data.tar.gz" tarball contains the unprocessed or minimally processed data used by Speos. If you intend to use the framework or want to inspect the data, download this part of the dataset.</p> <p>The "final_datasets.tar.gz" tarball contains tsv-formatted, processed data matrices which are directly used as input features for the ensemble models. </p> <p>There are two tsv-files per disease, one labeled "normal", which contains the p input features alongside the gene identifiers and a column which indicates if the gene is labeled as Mendelian or not, and another file labeled "with_n2v_vectors", which also contains the 100-dimensional vectors produced by Node2Vec so the N2V+MLP method can be reproduced with the exact same parameters. </p> <p>All files contain a header row which describes the column and no index column.</p> <p>The "model_parameters.tar.gz" tarball contains the model parameters for all ensemble models used to produce the candidate genes.</p>
Oligocene–Miocene exhumation of the Pinaleño metamorphic core complex, southeastern Arizona: support for magmatism and plate margin reorganization as controls on regional exhumation trends
<p>We present thermochronology data from igneous and metamorphic rock samples collected from the Pinale<strong>ñ</strong>o Mountains, southeast Arizona, U.S.A. Our interpretations of the data are described and discussed in a paper in the journal Tectonics, titled “Oligocene–Miocene exhumation of the Pinaleño metamorphic core complex, southeastern Arizona: support for magmatism and plate margin reorganization as controls on regional exhumation trends.” New data include biotite and white mica Ar/Ar analyses, apatite fission track analyses, apatite (U-Th-Sm)/He analyses, and zircon (U-Th-Sm)/He analyses. The data were used for inverse HeFTy modeling and forward radiation damage and annealing modeling (RDAAM) to investigate time-temperature histories. The data set comprises a table summarizing the results of Ar/Ar analyses (Table S1), a table with the detailed results of zircon (U-Th-Sm)/He thermochronology (Table S2), a table with the detailed results of apatite (U-Th-Sm)/He thermochronology (Table S3), a table summarizing the results of apatite fission track analyses, including radial plots (Table S4), and a table summarizing the input data and constraints used for inverse modeling.</p>
Epithelial polarization by the core planar cell polarity complex is exclusively non-autonomous
Open the record for dataset details and reuse information.
Methner et al., "Triple Oxygen Isotope Paleoaltimetry of the Kettle Metamorphic Core Complex (WA, USA)"
<p>Data set to Methner et al., "Triple Oxygen Isotope Paleoaltimetry of the Kettle Metamorphic Core Complex (WA, USA)" submitted to Tectonics</p>
FIGURE 5 in A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25° South Oceanic Core Complex in the Central Indian Ocean Ridge
FIGURE 5. Geographical distribution of all known Fibulia species used for comparison (source: WoRMS database (=World Porifera Database, WPD)).
FIGURE 4 in A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25° South Oceanic Core Complex in the Central Indian Ocean Ridge
FIGURE 4. Fibulia occiensis sp. nov. holotype (NCPOR/HYD-CIR/0029). A, oxeas. B–H, arcuate isochelae.
FIGURE 1 in A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25° South Oceanic Core Complex in the Central Indian Ocean Ridge
FIGURE 1. Location of the collection sites of Fibulia occiensis sp. nov. in the 25° South Oceanic Core Complex (Close to Kairei hydrothermal vent field and Rodrigues Triple Junction) in the Central Indian Ocean Ridge, Indian Ocean. The blue colour block indicates the track line of the benthic sledge. The red line indicates the ridge axis.
FIGURE 3 in A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25° South Oceanic Core Complex in the Central Indian Ocean Ridge
FIGURE 3. Fibulia occiensis sp. nov. Holotype (NCPOR/HYD-CIR/0029). A, SEM images showing the hispid surface of the sponge body and scattered arcuate isochelae forming the ectosome among the oxeas. B, the cross-section of the intercrossing tracts.
FIGURE 2. A in A new deep-sea sponge Fibulia occiensis sp. nov. (Poecilosclerida: Dendoricellidae) from the 25° South Oceanic Core Complex in the Central Indian Ocean Ridge
FIGURE 2. A, Fibulia occiensis sp. nov. holotype (NCPOR/HYD-CIR/0029), B, paratype (NCPOR/HYD-CIR/0030). C, section through the bundles of tracts showing many fine tracts. D, ectosomal skeleton plumose and feathery appearance of the body.
An Alternative Interpretation for the Genesis of "Oceanic core complexes" within the Western Parece Vela Basin
<p>Dataset for submission of Geophysical Research Letters.</p>
Figs 22–24 in Stepwise and cooperative assembly of a cytokinetic core complex in budding yeast Saccharomyces cerevisiae
Figs 22–24. Orthogonius pseudocheni Tian & Deuve, 2006. 22. habitus, male; 23–24. aedeagus, lateral view and apical lamella, dorsal view.
Figs 19–21 in Stepwise and cooperative assembly of a cytokinetic core complex in budding yeast Saccharomyces cerevisiae
Figs 19–21. Orthogonius macrophthalmus Tian & Deuve, 2013. 19. habitus, male; 20–21. aedeagus, lateral view and apical lamella, dorsal view.
Figs 16–18. Orthogonius angustus Chaudoir, 1871. 16 in Stepwise and cooperative assembly of a cytokinetic core complex in budding yeast Saccharomyces cerevisiae
Figs 16–18. Orthogonius angustus Chaudoir, 1871. 16. habitus, male; 17–18. aedeagus, lateral view and apical lamella, dorsal view.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.