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11 results for “DArTseq”
DArTseq genetic dataset associated with the article "Hybrids as mirrors of the past: genomic footprints reveal spatio-temporal dynamics and extinction risk of alpine extremophytes in the mountains of Central Asia"
<p>Description: This file stores genetic information on the single nucleotide polymorphism markers (SNPs) in the examined alkali grasses (Poaceae: Puccinellia). The dataset was generetad by Genome-Wide Restriction Fragment Analysis via the DArTseq platform (Diversity Arrays Technology Pty Ltd, Canberra, Australia), which combines complexity reduction methods, fragment size selection, and high-throughput sequencing, optimised for a target organism. The file contains raw data.<br> <br>Usage notes: We used R (version 4.2.2, 2022-10-31; https://www.R-project.org/) and RStudio (version 2022.07.2+576 "Spotted Wakerobin" Release (e7373ef832b49b2a9b88162cfe7eac5f22c40b34, 2022-09-06; http://www.rstudio.com/) on Windows 8.1 to handle this file. We used the dartR R-package (version 2.7.2) with necessary dependencies to import, proccess and analyse this data file as an object of a class genlight (dartR) in the R environment. You may also handle the file as an object of a class genlight using the adegenet and ade4 R-packages. To learn more about installation procedure and how to use of the R-packages visit: https://cran.r-project.org/web/packages/available_packages_by_name.html.<br> </p>
Dartseq SNP data of Uganda sorghum germplasm
<p>SNP data generated DArTseq for Ugandan S. bicolor germplasm accessions (UG set) from the Plant Genetic Resources Centre at the Uganda National Genebank.</p>
SNP data (DArTseq) for population genomics of Araucaria bidwillii
<p><span>We took Araucaria bidwillii leaf DNA samples from a total of 31 sites and 171 samples, representing 3 sites from a northern population in the Australian Wet Tropics and 28 sites from a southern population in Southeast Queensland, Australia. </span>SNP data was obtained from genotyping-by-sequencing platform Divesity Arrays Technology (DArTseq) and the resultant dataset has not been processed for quality control.</p>
Genlight table of ddRADseq-DArTseq Baikal sculpins adaptive radiation
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SNP reports of Cylindropuntia species from Dartseq used for population genetics analysis
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SNP data (DArTseq) for population genomics of Araucaria bidwillii
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Identifying suitable tester for evaluating striga resistant lines using DArTseq markers and agronomic traits
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DArTseq of Brassica
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DARTseq identifies m6A targets in mouse primary cells
GEO Series GSE231862. Mus musculus. 23 samples. Type: Other; Expression profiling by high throughput sequencing.
DARTseq identifies m6A targets in human CD34+ HSPCs
GEO Series GSE231861. Homo sapiens. 9 samples. Type: Other.
DArTSeq of Citrus
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