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3 results for “DCSsub”
DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data for benchmarking DCS tools.
<p>These data are the results from five independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 and 100:0 regulation scenarios.</p> <p> </p> <p>Simulated data from DCSsim: simulated_ChIP-seq_data.zip</p> <ul> <li>Set1: TF 50:50</li> <li>Set2: TF 100:0</li> <li>Set3: Sharp mark 50:50</li> <li>Set4: Sharp mark 100:0</li> <li>Set5: Broad mark 50:50</li> <li>Set6: Broad mark 100:0</li> </ul> <p> </p> <p>Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip</p> <ul> <li>Set1: Cebpa-ChIP-seq 50:50</li> <li>Set2: Cebpa-ChIP-seq 100:0</li> <li>Set3: H3K27ac-ChIP-seq 50:50</li> <li>Set4: H3K27ac-ChIP-seq 100:0</li> <li>Set5: H3K36me3-ChIP-seq 50:50</li> <li>Set6: H3K36me3-ChIP-seq 100:0</li> </ul>
DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data from different chromosomes.
<p>These data are the results from three independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 regulation scenarios for mm10 chr1, chr8, chr11, chr19 and chrX.</p> <p>Simulated data from DCSsim: simulated_ChIP-seq_data.zip</p> <p>set1: TF 50:50 chr11<br> set4: TF 50:50 chr8<br> set7: TF 50:50 chrX<br> set10: TF 50:50 chr1<br> set22: TF 50:50 chr19</p> <p>set2: Sharp mark 50:50 chr11<br> set5: Sharp mark 50:50 chr8<br> set8: Sharp mark 50:50 chrX<br> set11: Sharp mark 50:50 chr1<br> set23: Sharp mark 50:50 chr19</p> <p>set3: Broad mark 50:50 chr11<br> set6: Broad mark 50:50 chr8<br> set9: Broad mark 50:50 chrX<br> set12: Broad mark 50:50 chr1<br> set24: Broad mark 50:50 chr19</p> <p><br> Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip</p> <p>Set1: C/EBPa-ChIP-seq 50:50 chr11<br> Set2: C/EBPa-ChIP-seq 50:50 chr8<br> Set3: C/EBPa-ChIP-seq 50:50 chrX<br> Set4: C/EBPa-ChIP-seq 50:50 chr1</p> <p>Set5: H3K27ac-ChIP-seq 50:50 chr11<br> Set6: H3K27ac-ChIP-seq 50:50 chr8<br> Set7: H3K27ac-ChIP-seq 50:50 chrX<br> Set8: H3K27ac-ChIP-seq 50:50 chr1</p> <p>Set9: H3K36me3-ChIP-seq 50:50 chr11<br> Set10: H3K36me3-ChIP-seq 50:50 chr8<br> Set11: H3K36me3-ChIP-seq 50:50 chrX<br> Set12: H3K36me3-ChIP-seq 50:50 chr1</p> <p><br> C/EBPa-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set8)<br> H3K27ac-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set9)<br> H3K36me3-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set10)</p>
DCSsim (simulated) and DCSsub (sub-sampled) ChIP-seq data with different FRIP.
<p>These data are the results from three independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 regulation scenarios for four (sim) and three (sub) different FRIP ranges.</p> <p>Simulated data from DCSsim: simulated_ChIP-seq_data.zip</p> <p>Set13: TF 50:50 x0.5 background<br> Set14: TF 50:50 x2 background<br> Set15: TF 50:50 x3 background<br> Set25: TF 50:50 x1 background</p> <p>Set16: Sharp mark 50:50 x0.5 background<br> Set17: Sharp mark 50:50 x2 background<br> Set18: Sharp mark 50:50 x3 background<br> Set26: Sharp mark 50:50 x1 background</p> <p>Set19: Broad mark 50:50 x0.5 background<br> Set20: Broad mark 50:50 x2 background<br> Set21: Broad mark 50:50 x3 background<br> Set27: Broad mark 50:50 x1 background</p> <p><br> Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip</p> <p>Set1: PU1-ChIP-seq 50:50<br> Set2: STAT6-ChIP-seq 50:50<br> Set8: C/EBPa-ChIP-seq 50:50</p> <p>Set4: H3K4me3-ChIP-seq 50:50<br> Set9: H3K27ac-ChIP-seq 50:50<br> Set15: H3K9ac-ChIP-seq 50:50</p> <p>Set6: H3K27me3-ChIP-seq 50:50<br> Set10: H3K36me3-ChIP-seq 50:50<br> Set11: H3K79me2-ChIP-seq 50:50</p>
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