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38 results for “Defect control”
Research Data Supporting "Controlling Exchange Pathways in Dynamic Supramolecular Polymers by Controlling Defects"
<p>This repository contains the set of data shown in the paper "<strong>Controlling Exchange Pathways in Dynamic Supramolecular Polymers by Controlling Defects</strong>", published on <strong>ACS Nano</strong> (DOI: 10.1021/acsnano.1c01398).</p> <p>The data stored in this section is organized as follow:</p> <p><strong>supervisedClustering/ :</strong> folder containing scripts for carrying out the supervised analysis as discussed in the main paper. Subfolders are divided in <strong><code>kmeans</code></strong><code><strong>/</strong></code> and <strong><code>spectral</code></strong><code>/</code> contain the different analysis as explained in the paper.</p> <p><strong>unbiasMD/ : </strong>folder containing the Gromacs input files for reproducing the unbias MD trajectories of the 3 types of fiber, as explained in the paper.</p> <p><strong>biasMD/</strong> <strong>:</strong> folder containing the PLUMED input files for reproducing enhanced sampling dynamics as discussed in the paper.</p> <p><strong>unsupervisedClustering/ : </strong>folder containing the directions and the original files to reproduce the unsupervised clustering results.</p>
The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens
<p>Nonsense-mediated mRNA decay (NMD) is important for both RNA quality control and gene regulation. NMD targets aberrant mRNA transcripts for decay and also directly influences the abundance of specific, non-aberrant transcripts in a wide range of eukaryotes. In animals, the PIK kinase, SMG1, plays an essential role in NMD, by phosphorylating the core NMD effector, UPF1. Despite being absent from the genome of the model plant, <em>Arabidopsis thaliana</em>, SMG1 is ubiquitous throughout the plant kingdom. Here we utilize RNA-seq to reveal the full range of processes involving <em>SMG1</em> in plants. In NMD-compromised, <em>smg1</em> mutant moss, 30% of multi-isoform genes produce NMD targeted transcript isoforms. Taking a machine learning approach, we show that an exon-exon junction downstream of a stop codon acts as the major feature to target transcripts to NMD and that retained intron isoforms are underrepresented among NMD targets. Furthermore, we show that <em>SMG1</em> is involved in other quality control pathways, affecting DNA repair and the unfolded protein response, in addition to its role in mRNA quality control. <em>smg1</em> plants have increased susceptibility to DNA damage, but increased tolerance to unfolded protein inducing agents. The involvement of SMG1 in RNA, DNA and protein quality control has major implications for the study of these processes in plants.</p>
Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4
<p>Raw experimental data of publication submitted at Materials Today: Physics ''Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4''</p>
Simultaneous Control of Aluminum Atoms and Defects in MOR Zeolite Framework by Post-Synthetic Treatments
<p><span>Input and output files used to calculate 27Al NMR chemical shifts in Quantum Espresso 6.5 for modernities with various defects and Al substitutions.</span></p>
Data from: Non-inheritable risk factors during pregnancy for congenital heart defects in offspring: a matched case-control study
<p>Data analyzed in "Non-inheritable risk factors during pregnancy for congenital heart defects in offspring: a matched case-control study". The data provided by the authors to benefit other researchers. The posted materials are not copyedited and are the sole responsibility of the authors, so questions should be addressed to the corresponding author.</p>
Dataset examples related to the publication entitled "High-Potential Test for Quality Control of Separator Defects in Battery Cell Production"
<p>Dataset examples and visualization program code for the publication entitled "High-Potential Test for Quality Control of Separator Defects in Battery Cell Production". Publication Doi: https://doi.org/10.3390/batteries7040064.</p>
"The current-voltage characteristics and partial pressure dependence of defect controlled electrochemical reactions on mixed conducting oxides"
<p>Oxygen exchange reaction rates on mixed conducting perovskite electrodes are described as a function of defect concentrations, see <a href="http://elchinfo.cta.tuwien.ac.at/pmwiki/uploads/Profiles/Schmid_JESoc.pdf">The current-voltage characteristics and partial pressure dependence of defect controlled electrochemical reactions on mixed conducting oxides</a> for a detailed description.</p> <p>Here, (exchange) currents, polarization resistances, <span class="math-tex">\(p_{\rm{O_2}}\)</span> dependencies and Tafel-slopes are calculated as function of <span class="math-tex">\(p_{\rm{O_2}}\)</span> and overpotential for different possible reaction mechnisms. The defect concentrations are taken from the model material La<sub>0.6</sub>Sr<sub>0.4</sub>FeO<sub>3-<span class="math-tex">\(\delta\)</span></sub>, and listed in Brouwer_Bias.csv as a function of <span class="math-tex">\(p_{\rm{O_2}}\)</span> and overpotential.</p> <p>Model 7 describes a molecular mechanisms wothout adsorption limitation, model 8 includes adsorption limitation. Likewise Models 10 and 11 describe atomic mechanisms without and with adsorption limitation, respectively.</p> <p>Overpotentials are listed in V, oxygen partial pressures in bar, defect concentrations in defects per unit cell and currents are in arbitrary units as are resistances.</p> <p>Partial pressure and overpotential dependencies (p and n slopes) are given as <span class="math-tex">\(\frac{\partial \ln j}{\partial\ln p_{\rm{O_2}}}\)</span>(unitless) and <span class="math-tex">\(\frac{\partial \ln j}{\partial\eta}\)</span>(/V), and likewise with resistances instead of currents (rp and rn slopes), respectively.</p> <p>The source code for this project is available at: https://github.com/AlexSchmid22191/EIS_R_Sim</p>
Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4
<p>Data of publication submitted to Materials Today: Physics "Combined temperature and potential induced defect steering for local doping control in Cu2ZnSnSe4". Processed data is included in .opju files.</p>
A Randomized Controlled Trial Comparing Chondro-Gide® to Microfracture Alone for Treatment of Knee Cartilage Defects.
ClinicalTrials.gov study NCT02993510. IPD Sharing: NO. Countries: 1. Publications: 3.
Conventional or Minimally Invasive Surgical Technique for the Treatment of Furcation Defects Using Enamel Matrix Derivative and Anorganic Bovine Bone - a Randomized Controlled Clinical Trial.
ClinicalTrials.gov study NCT02102360. IPD Sharing: Not stated. Countries: 1. Publications: 14.
Inflammation-resolution Therapy in MINST of Periodontal Intrabony Defect: a Pilot Randomised Controlled Trial
ClinicalTrials.gov study NCT07203872. IPD Sharing: UNDECIDED. Countries: 1. Publications: 3.
ZNF574 is a Quality Control Factor for Defective Ribosome Biogenesis Intermediates [CRISPRi_growth]
GEO Series GSE275991. Homo sapiens. 8 samples. Type: Other.
ZNF574 is a Quality Control Factor for Defective Ribosome Biogenesis Intermediates [RNA-Seq]
GEO Series GSE275992. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control
GEO Series GSE153597. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Other.
Codon Pair-Specific Translation Defects Induce Ribosome-Associated Quality Control to Avoid Proteotoxic Stress [RNA-seq]
GEO Series GSE245672. Saccharomyces cerevisiae. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-nucleus RNA sequencing of OCTN2-defective engineered heart tissues and isogenic control
GEO Series GSE211650. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Mutations in distinct translation-dependent quality control pathways lead to convergent molecular pathogenesis and neurodevelopmental defects.
GEO Series GSE162556. Mus musculus. 41 samples. Type: Expression profiling by high throughput sequencing.
Premature aging in aneuploid yeast is influenced by aneuploidy-induced defects in Ribosome Quality Control [RiboSeq]
GEO Series GSE269238. Saccharomyces cerevisiae YPS1009. 8 samples. Type: Other.
ZNF574 is a Quality Control Factor for Defective Ribosome Biogenesis Intermediates [CRISPRi_FLOW]
GEO Series GSE275990. Homo sapiens. 4 samples. Type: Other.
P. falciparum heat shock response in a PfAP2-HS-defective population compared to its wild type control.
GEO Series GSE149392. Plasmodium falciparum. 21 samples. Type: Expression profiling by array.
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International Brain Laboratory public data
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OpenNeuro
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