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Dataset results
24 results for “Demultiplexing”
Dataset for "Fast and efficient demultiplexing of single photons from a GaAs quantum dot with resonantly enhanced electro-optic modulators"
<p><strong>Dataset for "Fast and efficient demultiplexing of single photons from a quantum dot with resonantly enhanced electro-optic modulators"</strong></p> <p>A description of the dataset is found in the <strong>readme.md</strong> file (markdown markup language).</p>
Multifunctional blazed gratings for multiband spatial filtering, retroreflection, splitting, and demultiplexing based on C2 symmetric photonic crystals
<p>These datafiles were generated by MATLAB to create a part of the figures in the paper.</p> <p>The work supported partially by the Narodowe Centrum Nauki (projects nos UMO-2015/17/B/ST3/00118 and UMO-2020/39/I/ST3/02413), TUBITAK (Program No. 2221), and projects UBACyT 20020150100028BA, UBACyT 20020190100108BA and CONICET PIP 11220170100633CO.</p> <p> </p>
BioDemuX.jl: A High-Performance Julia-based Tool for Accurate Sequence Demultiplexing
<p>This repository contains all the in silico test data required for executing demultiplexing, as described in the associated publication.</p>
Population genomics of an Octopus species identify oceanographic barriers and inbreeding patterns: Demultiplexed reads of 71 Octopus insularis individuals
<p>Coastal marine ecosystems are highly productive and important for global fisheries. To mitigate over-exploitation and to establish efficient conservation management plans for species of economic interest, it is necessary to identify the oceanographic barriers that condition divergence and gene flow between populations with those species, and that determine their relative amounts of genetic variability. Here, we present the first population genomic study of an <em>Octopus</em> species, <em>Octopus</em> <em>insularis</em>, which was described in 2008 and is distributed in coastal and oceanic island habitats in the tropical Atlantic Ocean, Gulf of Mexico and the Caribbean Sea. Using genomic data, we identify the South Equatorial current as the main barrier to gene flow between southern and northern parts of the range, followed by discontinuities in the habitat associated with depth. We find that genetic diversity of insular populations significantly decreases after colonization from the continental shelf, also reflecting low habitat availability. Using demographic modelling, we find signatures of a stronger population expansion for coastal relative to insular populations, consistent with estimated increases in habitat availability since the Last Glacial Maximum. The direction of gene flow is coincident with unidirectional currents and bidirectional eddies between otherwise isolated populations. Together, our results show that oceanic currents and habitat breaks are determinant in the diversification of coastal marine species where adults have a sedentary behavior but paralarvae are dispersed passively, shaping standing genetic variability within populations. Lower genetic diversity within insular populations implies that these are particularly vulnerable to current human exploitation and selective pressures, calling for the revision of their protection status.</p>
Accumulation of airborne, eukaryotic environmental DNA contamination: Raw sequencing data and demultiplexing info
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Population genomics of an Octopus species identify oceanographic barriers and inbreeding patterns: Demultiplexed reads of 71 Octopus insularis individuals
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Benchmarking of Computational Demultiplexing Methods for Single-Nucleus RNA Sequencing Data [dataset 2]
GEO Series GSE298266. Homo sapiens; Ovis aries. 10 samples. Type: Expression profiling by high throughput sequencing.
Single Nucleotide Polymorphism (SNP) and Antibody-based Cell Sorting (SNACS): A tool for demultiplexing single-cell DNA sequencing data
GEO Series GSE255224. Homo sapiens. 15 samples. Type: Other.
GMM-Demux: sample demultiplexing, multiplet detection, experiment planning and novel cell type verification in single cell sequencing.
GEO Series GSE152981. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Benchmarking of Computational Demultiplexing Methods for Single-Nucleus RNA Sequencing Data [dataset 1]
GEO Series GSE298265. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
A hybrid single cell demultiplexing strategy that increases both cell recovery rate and calling accuracy
GEO Series GSE230810. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Demultiplexing Ig repertoires by parallel mRNA/DNA sequencing shows major differential alterations in severe COVID-19
GEO Series GSE222431. Homo sapiens. 150 samples. Type: Expression profiling by high throughput sequencing.
Projekt938_scRNAseq_TSd5_d7_d14_NextSeq_demultiplex_143_AAC2JFMHV_3
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Projekt938_scRNAseq_FGK45_Heart_blood_spleen_NextSeq_demultiplex_150_AAC55NMHV_3
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Projekt938_scRNAseq_FGK45_Heart_blood_spleen_NextSeq_demultiplex_150_AAC55NMHV_1
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Projekt938_scRNAseq_TSd5_d7_d14_NextSeq_demultiplex_143_AAC2JFMHV_1
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Projekt938_scRNAseq_TSd5_d7_d14_NextSeq_demultiplex_143_AAC2JFMHV_2
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Projekt938_scRNAseq_FGK45_Heart_blood_spleen_NextSeq_demultiplex_150_AAC55NMHV_2
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NextSeq_demultiplex_150_AAC55NMHV.part3 von 3
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NextSeq_demultiplex_143_AAC2JFMHV.part3 von 3
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.