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ShareScore release 0.9.0
Dataset results
8 results for “Differential transcript usage”
Feature count data for Love et al. 2019 analysis for "Using equivalence class counts for fast and accurate testing of differential transcript usage" paper
<p>Feature count data for Love et al. 2019 analysis used in the "Using equivalence class counts for fast and accurate testing of differential transcript usage" paper. For reproducing the analyses and figures using the <a href="https://github.com/Oshlack/ec-dtu-paper/">ec-dtu-paper</a> code.</p> <p>Contains:</p> <ul> <li>Equivalence class count matrix for all 24 samples (using counts from Salmon)</li> <li>Salmon quantification results for all 24 samples</li> <li>Exon counts for all 24 samples using DEXSeq-count</li> </ul>
An orchestrated intron retention program in meiosis controls timely usage of transcripts during germ cell differentiation (RNA-Seq)
GEO Series GSE95138. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish
GEO Series GSE40629. Danio rerio. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors [ChIP-seq]
GEO Series GSE253671. Arabidopsis thaliana. 31 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Investigation of diurnal polyadenylation site usage reveals differential regulation in the transcription of gene isoforms
GEO Series GSE151173. Mus musculus. 144 samples. Type: Expression profiling by high throughput sequencing; Other.
Exploring the Dynamics and Consequences of Differential Transcript Usage in Cardiomyocyte Fate Specification
GEO Series GSE274653. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing.
Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors [RNA-seq]
GEO Series GSE253674. Arabidopsis thaliana. 48 samples. Type: Expression profiling by high throughput sequencing.
Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors
GEO Series GSE253676. Arabidopsis thaliana. 79 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.