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4 results for “Dikarya”
The data for: Fucose as a nutrient ligand for Dikarya and a building block of early diverging lineages
<div><br><strong>Supplementary Figure </strong> <div> <div> <div></div> <div> <p> </p> <p>CLANS clustering of GT-A clan peptidyltransferases present in Fungi with animal representatives of transferases acting on glucosylated, fucosylated and galactosylated peptides. After clustering of fungal Fringe homologs with 42 animal representatives of both LFNG and C1GLT transferases, we obtained four clusters with 4946 fungal sequences. However, only four fungal sequences (Rozella allomycis RKP19558.1,RKP21212.1, EPZ36320.1 and Fusarium oxysporum EXK84998.1) group together with the human LFNG (Q8NES3) protein sequence. Two major fungal clusters are equally distant from LFNG and C1GLT clans. Basidiobolus meristosporus ORX91553.1 and Batrachochytrium salamandrivorans KAH6567989.1, KAH6579126.1 and B. dendrobatidis EGF83417.1 sequences group together with the animal C1GLT sequences. We provide all Fringe-like accessions in Supplementary Table S1 despite unresolved specificity questions.</p> <p> </p> </div> <strong>Supplementary File</strong></div> <div>Phylogenetic trees for fungal fucosyltrasferases as a newick file format.<br> <div> <div> <p><strong> Supplementary Table S1.</strong></p> <p>All protein identifiers, protein names and aliases, expression profiles</p> <p> </p> <p> </p> </div> </div> </div> </div> </div>
The data for Non-Dikarya fungi share the TORC1 pathway with animals, not with yeasts
<p>This dataset provides all the raw data used in the<strong> Non-Dikarya fungi share the TORC1 pathway with animals, not with yeasts </strong>manuscript including:</p> <p><strong>Supplementary file S1<br></strong></p> <p>All protein identifiers, genomic assemblies, transcriptomic datasets </p> <p><strong>Supplementary file S2<br></strong></p> <p>The figures of phylogenetic trees for TORC1 proteins.</p> <p><strong>Supplementary Dataset SD1.</strong></p> <p>The phylogenetic trees for TORC1 proteins</p> <p><strong>HMM profiles</strong> for EGO1 EGO2 EGO3 and Tco89 proteins</p> <p>This work was supported by National Science Centre grants (#2021/41/B/NZ2/02426 to A.M.)</p>
Data from: Distribution and bioinformatic analysis of the cerato-platanin protein family in Dikarya
The cerato-platanin family is a group of small cysteine-rich fungal proteins new to science. They usually are abundantly secreted extracellularly and are involved in fungus-host interactions. With the advance of available fungal genome sequences, we performed a genomewide study of the distribution of this family in fungi and analyzed the common characteristics of the protein sequences. A total of 55 fungal genomes, including 27 from Ascomycota and 28 from Basidiomycota, were used. A total of 130 cerato-platanin homolog protein sequences were obtained and analyzed. Our results showed that cerato-platanin homologs existed in both Ascomycota and Basidiomycota but were lost in early branches of jelly fungi as well as in some groups with yeast or yeast-like forms in their life cycle. Homolog numbers varied considerably between Ascomycota and Basidiomycota. Phylogenetic analysis suggested that the ancestor of the Dikarya possessed multiple copies of cerato-platanins, which sorted differently in Ascomycota and Basidiomycota, and that this gene family might have expanded in the Basidiomycota. Almost all homologs contained signal peptide sequences, and the length of mature proteins were mainly 105-134 amino acids. Four cysteines involved in forming two disulfide bridges and signature sequences (CSD or CSN) were highly conserved in most homologs. These results indicated a higher diversity of the cerato-platanin family in Basidiomycota than Ascomycota.
Data from: Distribution and bioinformatic analysis of the cerato-platanin protein family in Dikarya
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