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42 results for “Dynamic cell signaling”
Modeling single-cell heterogeneity in signaling dynamics of macrophages reveals principles of information transmission
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Raw data of the publication ''Radical' differences between two FLIM microscopes affect interpretation of cell signaling dynamics'
<p>Raw data and data used to create the figures.</p>
Automated cell type annotation and exploration of single cell signalling dynamics using mass cytometry and machine learning
<p>In this repository we share processed data that were generated using the bioinformatics framework we developed in publication "Automated cell type annotation and exploration of single cell signalling dynamics using mass cytometry and machine learning".</p> <p>These datasets accompany the source codes provided in our GitHub page https://github.com/dkleftogi/singleCellClassification. </p> <p>The datasets are as follows:</p> <ol> <li>cofactors_v2.RDa : antibody-specific co-factors used to harmonise fcs files from different batches</li> <li>ctrl_annotated.RDa : the annotated cohort of seven healthy donors</li> <li>data_umap.RDa : UMAP representation of the data used to generate the figures in our paper</li> <li>DREMI_feature_matrix.RDa : the DREMI feature matrix used for ML-based modelling presented in our paper</li> <li>median_feature_matrix.RDa : the baseline feature matrix based on medians used for ML-bases modelling in the paper</li> <li>patient_annotated.RDa : the annotated cohort of leukemia patients (n=43)</li> </ol> <p>We note that the raw files of the leukemia cohort can be found in http://flowrepository.org/id/RvFr0LLv9McDJ89jgK50G4lwnfDFRTrcMelxYgnSIcE2Cymrpf2qh2NaWybtWDNH</p> <p> </p>
Data from: A RhoG-mediated signaling pathway that modulates invadopodia dynamics in breast cancer cells
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Dynamics of m6A RNA methylome during leukemogenesis reveals a role of PRMT6-MFSD2A signaling axis in maintaining AML stem cells.[RIP-seq]
GEO Series GSE218610. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
State- and stimulus-specific dynamics of SMAD signaling determine fate decisions in individual cells
GEO Series GSE223670. Homo sapiens. 31 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA-Seq reveals Fgf signaling dynamics during sensory hair cell regeneration
GEO Series GSE123241. Danio rerio. 3 samples. Type: Expression profiling by high throughput sequencing.
A Probabilistic Model of Transcription Dynamics applied to Estrogen Signalling in Breast Cancer Cells
GEO Series GSE44800. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells [Endoderm RNA-seq and ChIP-seq data sets]
GEO Series GSE52657. Homo sapiens. 36 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dynamic developmental signaling logic underlying lineage bifurcations during human endoderm induction and patterning from pluripotent stem cells
GEO Series GSE52658. Homo sapiens. 60 samples. Type: Expression profiling by array; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Stem cell dynamic and signalling controlling mechanical force mediated skin expansion
GEO Series GSE126735. Mus musculus. 10 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
NfκB signaling dynamics and their target genes differ between mouse blood cell types and induce distinct cell behavior
GEO Series GSE199404. Mus musculus. 282 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
1Arp2/3 complex controls microglial cell dynamics and homeostasis by regulating TGF-β signaling.
GEO Series GSE288625. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Single-cell intracellular epitope and transcript detection revealing signal transduction dynamics
GEO Series GSE162461. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
Dynamic control of transcriptional regulator BACH2 overcomes T cell dysfunction driven by tonic CAR signaling
GEO Series GSE287286. Homo sapiens. 65 samples. Type: Expression profiling by high throughput sequencing.
Dynamics of m6A RNA methylome during leukemogenesis reveals a role of IGF2BP2-PRMT6-MFSD2A signaling axis in maintaining AML stem cells [IGF2BP2 RNA-seq]
GEO Series GSE210278. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
p65 signaling dynamics drive the developmental progression of hematopoietic stem and progenitor cells through cell cycle regulation
GEO Series GSE253758. Danio rerio. 6 samples. Type: Expression profiling by high throughput sequencing.
Dynamics of m6A RNA methylome during leukemogenesis reveals a role of IGF2BP2-PRMT6-MFSD2A signaling axis in maintaining AML stem cells [Prmt6 RNA-seq]
GEO Series GSE210279. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Dynamics of m6A RNA methylome during leukemogenesis reveals a role of PRMT6-MFSD2A signaling axis in maintaining AML stem cells.
GEO Series GSE218611. Mus musculus. 13 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dynamic transcriptional activity and chromatin remodeling of regulatory T cells after varied duration of IL-2R signaling
GEO Series GSE162030. Mus musculus. 31 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.