Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
135
datasets available to search
ShareScore release 0.9.0
Dataset results
135 results for “EGFP”
An annotated high-content fluorescence microscopy dataset with EGFP-Galectin-3-stained cells and manually labelled outlines
<p>Here we present a benchmarking dataset of fluorescence microscopy images with EGFP-Galectin-3-stained cells together with annotations of their outlines. Images were randomly selected from an RNA interference screen with a modified U2OS osteosarcoma cell line, acquired on a Thermo Fischer CX7 high-content imaging system at 20x magnification. </p> <p>The dataset contains 60 images showing over 2000 labelled nuclear objects in total, which is sufficiently large to train well-performing neural networks for instance or semantic segmentation. It is pre-split into training, development and test set, each in a zip file. The dataset should be referred to as Aitslab_bioimaging2.</p> <p>For most of the images, nuclear staining and annotations have been published previously in the dataset Aitslab_bioimaging1 (https://doi.org/10.5281/zenodo.6657260). The conversion script to produce the png images from the C01 images was published together with this dataset.</p>
Virtual screening on Nsp16: screening of 1084 compounds in VeroE6-eGFP cells
<p>This report describes the most relevant results of virtually screening the Janssen Pharmaceutica compound collection for potential activity against SARS-CoV-2 Nsp16 and confirmation of potential hits in a VeroE6 cell-based anti-SARS-CoV-2 assay.</p>
Fig. 15 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 15. Trychosis breviterebratus sp. nov. (A-F, KPM-NK 75758) ― A, lateral habitus; B, dorsal habitus; C, frons, frontal view; D, head and mesosoma, lateral view; E, propodeum, dorsal view; F, right wings.
Fig. 14. Hylophasma luica Sheng, Li in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 14. Hylophasma luica Sheng, Li & Wang, 2019 (A-D, KPM-NK 75813; E, KPM-NK 75821) and Picardiella melanoleuca (Gravenhorst, 1829)(F-J, KPM-NK 75744) ― A, E, F, lateral habitus; B, G, dorsal habitus; C, H, head, frontal view; D, J, right fore wing; I, propodeum, dorsal view.
Fig. 13. Hoplocryptus sumiyona Uchida, 1956 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 13. Hoplocryptus sumiyona Uchida, 1956 (A-C, KPM-NK 76581) and H. toshimensis sp. nov. (E-I, KPM-NK 75797) ― A, E, dorsal habitus; B, F, head, frontal view; C, head and mesosoma, dorso-lateral view; D, lateral habitus; G, propodeum, dorsal view; H, right fore wing; I. metasoma, dorsal view.
Fig. 12 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 12. Hoplocryptus pini (Momoi, 1973) (A, D, F, KPM-NK 76578; B, E, KPM-NK 75780; C, G, KPM-NK 75774; H-J, 76580) ― A-C, H, lateral habitus; D, E, I, head, mesosoma and metasoma, dorsal view; F, J, head, frontal view; G, propodeum, dorsso-lateral view.
Fig. 10 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 10. Hoplocryptus ezoensis sp. nov. (A, C-F, KPM-NK 75799; B, KPM-NK 75802) and Ho. intermedius sp. nov. (G-K, KPM-NK 75806; L, M, KPM-NK 76582) ― A, G, L, lateral habitus; B, C, dorsal habitus; D, H, M, head, frontal view; E, J, propodeum, dorsal (E) and dorso-lateral (J) view; I, head and mesoscutum, dorso-lateral view; K, right fore wing.
Fig. 6. Caenocryptoides convergens Momoi, 1966 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 6. Caenocryptoides convergens Momoi, 1966 (A-C, TMNH) and Cryptus daidaigaster sp. nov. (D-J, NIAES) ― A, D, I, lateral habitus; B, E, head, mesosoma and metasoma, dorso-lateral view; C, F, J, head, frontal view; G, propodeum, dorsal view; H, right wings.
Fig. 2 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 2. Aritranis kuro sp. nov. (A, B, KPM-NK 75832); Buathra nipponica sp. nov. (C, D, KPM-NK 75746), Glabridorsum japonicum sp. nov. (E, KPM-NK 75742), Hoplocryptus ezoensis sp. nov. (F, KPM-NK 75799), Ho. intermedius sp. nov. (G, KPM-NK 75804), Ho. japonicus sp. nov. (H, KPM-NK 75771), Ho. maculatus sp. nov. (I, KPM-NK 75790, J, KPM-NK 75781, K, KPM-NK 75783), Hylophasma luica Sheng, Li & Wang, 2019 (L, M, KPM-NK 75813) and Trychosis breviterebratus sp. nov. (N, KPM-NK 75748), females ― A, F, G, H, M, propodeum and T I, dorsal (A, H, M) and lateral (F, G) view; B, E, L, T I, lateral view; C, I, propodeum, lateral (C) and dorsal (I) view; D, T I, lateral view; J, K, area basalis and part of anterior transverse carina of propodeum; N, metasoma, lateral view. Surface sculpture of right half of Fig. 2A omitted.
Fig. 1 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 1. Aritranis kuro sp. nov. (A, KPM-NK 75838); Buathra nipponica sp. nov. (B, C, KPM-NK 75746), Hoplocryptus ezoensis sp. nov. (D, KPM-NK 75799), Ho. ashoroensis sp. nov. (E, NIAES), Ho. intermedius sp. nov. (F, KPM-NK 75804), Ho. japonicus sp. nov. (G, KPM-NK 75771), Ho. maculatus sp. nov. (H, KPM-NK 75781), Ho. toshimensis sp. nov. (I, KPM-NK 75797), Hylophasma luica Sheng, Li & Wang, 2019 (J, K, KPM-NK 75813) and Trychosis breviterebratus sp. nov. (L-P, KPM-NK 75748), females ― A-D, J-M, head, frontal (A, B, D, J, L), lateral (C) and dorsal (K, M) view; E-I, apical margin of clypeus, frontal view; K, left mandible; O, left fore femur, anterior view; lower part of epicnemial carina, lateral view.
Fig. 5 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 5. Buathra nipponica sp. nov. (A-G, KPM-NK 75746; H, I, KPM-NK 75747) ― A, lateral habitus; B, mesosoma, lateral view; C, head, mesosoma and metasoma, dorsal view; D, frons, frontal view; E, propodeum, dorsal view; F, right fore wing; G, apex of metasoma, dorso-lateral view.
Fig. 9 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 9. Gotra elegans sp. nov. (A, C, D, KPM-NK 75822; B, E, KPM-NK 75823) and Hoplocryptus ashoroensis sp. nov. (F-J, NIAES) ― A, C, lateral habitus; B, dorsal habitus; C, H, head, frontal view; D, head, mesoscutum and scutellum, dorsal view; E, I, propodeum, dorsal view; J, right fore wing.
Fig. 4. Agrothereutes minousubae Nakanishi, 1965 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 4. Agrothereutes minousubae Nakanishi, 1965 (A, B, KPM-NK 76585; C, D, KPM-NK 76590) and Aritranis kuro sp. nov. (E, G, I, KPM-NK 75824; F, H, KPM-NK 75825; J, K, KPM-NK 76577) ― A, C, E, J, lateral habitus; B, tegula and humeral plate (red arrow), dorso-lateral view; D, G, K, head, frontal view; F, dorsal habitus; H, propodeum, dorsal view; I, right wings.
Fig. 7. Gambrus homonae Sonan, 1930 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 7. Gambrus homonae Sonan, 1930 (A, KPM-NK 76572; B-D, 76568; E, KPM-NK 76573) ― A, E, lateral habitus; B, head, frontal view; C, propodeum, dorsal view; D, right fore wing.
Fig. 3 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 3. Aritranis kuro sp. nov. (A, KPM-NK 75838), Buathra nipponica sp. nov. (B, KPM-NK 75746), Cryptus daidaigaster sp. nov. (C, NIAES), Gambrus homonae Sonan, 1930 (D, KPM-NK 76566); Glabridorsum japonicum sp. nov. (E, KPM-NK 75742), Gotra elegans sp. nov. (F, KPM-NK 75822); Hoplocryptus ashoroensis sp. nov. (G, NIAES), Ho. ezoensis sp. nov. (H, KPM-NK 75800), Ho. intermedius sp. nov. (I, KPM-NK 75804), Ho. japonicus sp. nov. (J, KPM-NK 75771), Ho. maculatus sp. nov. (K, KPM-NK 75781), Ho. pini (L, KPM-NK 76579), Ho. toshimensis sp. nov. (M, KPM-NK 75797), Picardiella melanoleuca (Gravenhorst, 1829) (N, KPM-NK 75744) and Trychosis breviterebratus sp. nov. (N, KPM-NK 75758), apex of ovipositor, lateral view.
Fig. 8 in Expression of green fluorescent protein defines a specific population of lamina II excitatory interneurons in the GRP::eGFP mouse
Fig. 8. Glabridorsum japonicum sp. nov. (A, C, E, G, KPM-NK 75742; B, D, F, KPM-NK 75743) ― A, lateral habitus; B, head, mesosoma and metasoma, dorsal view; C, D, mesosoma, lateral view; E, head, frontal view; F, propodeum, dorsal view; G, apical part of right fore wing.
3dpf zebrafish larvae, 96 well plate,Tg(wt1b:EGFP), dorsal view, ACQUIFER Imaging Machine
<p>Datasets originate from internal test runs at ACQUIFER on the Imaging Machine (see also application note on "<a href="https://www.acquifer.de/downloads/Clicktoolappnote_ImagingMachine.pdf">The ACQUIFER PlateViewer: A tool for visualizing high content screening data and supervised feedback microscopy</a>")</p> <p>The datasets contain images acquired from 96 <em>Tg(wt1b:EGFP)</em> embryos at 3 dpf aligned in agarose cavities generated with 3d printed orientation tools (<a href="https://rdcu.be/byto9">Wittbrodt, Jonas N., Urban Liebel, and Jochen Gehrig. "Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing." <em>BMC biotechnology</em> 14.1 (2014): 36.</a>):</p> <p>- 2x, 4x, 10x views</p> <p>- for each well (e.g. <em>A001</em>) a multi-color z-stack was acquired, with N z-slices (SL<em>NNN</em>) in two channels: BF (CO<em>6</em>) and GFP (CO<em>3</em>)</p> <p>Example file name containing metadata: -<strong><em>A001-</em></strong>-PO01--LO001--<em><strong>CO3</strong></em>--<em><strong>SL001</strong></em>--PX32500--PW0100--IN0100--TM281--X014580--Y011262--Z210710--T0200256066--WE00001.tif</p> <p>Used also as benchmark dataset for Multi-Template Matching by Thomas, LSV and Gehrig, J</p> <p>See implementation in Fiji <a href="https://github.com/LauLauThom/MultipleTemplateMatching">https://github.com/LauLauThom/MultipleTemplateMatching</a></p> <p>and in KNIME <a href="https://github.com/LauLauThom/MultipleTemplateMatching-KNIME">https://github.com/LauLauThom/MultipleTemplateMatching-KNIME</a></p> <p>Contact:</p> <p>j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de</p> <p> </p> <p><strong>Ethic statement</strong></p> <p>The work presented does not involve work with animals according to German and European<br> legislation. All experiments have been performed at stages prior to the legal onset of animal life.<br> To obtain zebrafish embryos and larvae, fish were maintained in closed stocks at Heidelberg University.<br> Zebrafish husbandry and experiments are under the institutional control of the Universities animal<br> welfare agency. All the zebrafish husbandry and experimental procedures were performed in<br> accordance with the German animal welfare standards (Tierschutzgesetz §11, Abs. 1, Nr. 1, husbandry<br> permit number 35-9185.64/BH Wittbrodt) and in accordance with German and European Union animal<br> welfare guidelines. The fish facility is under the supervision of the local representative of the animal<br> welfare agency.</p>
(07)-Ratke2020A-DS0003 – Drosophila melanogaster w[*]; P{w[+mC]=His2Av-EGFP.C}2/SM6a line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(07)-Ratke2020A-DS0003 – <em>Drosophila melanogaster</em> w[*]; P{w[+mC]=His2Av-EGFP.C}2/SM6a line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
Zebrafish with lyz:EGFP expressing neutrophils: Mesh Well Inserts Z-stack 3
<p>96-well plate z-stack of zebrafish with lyz:EGFP expressing neutrophils acquired with a multi-camera array microscope (MCAM)(Ramona Optics Inc., Durham, NC, USA). Mesh well inserts are used and half of the zebrafish on the plate were injected with csf3r morpholino. The overall z-stack is broken into four files.</p> <p> </p> <p>HDF5 files can be opened using open source Python software: https://docs.xarray.dev/</p>
Zebrafish with lyz:EGFP expressing neutrophils: Mesh Well Inserts Z-stack 2
<p>96-well plate z-stack of zebrafish with lyz:EGFP expressing neutrophils acquired with a multi-camera array microscope (MCAM)(Ramona Optics Inc., Durham, NC, USA). Mesh well inserts are used and half of the zebrafish on the plate were injected with csf3r morpholino. The overall z-stack is broken into four files.</p> <p> </p> <p>HDF5 files can be opened using open source Python software: https://docs.xarray.dev/</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.