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36
datasets available to search
ShareScore release 0.9.0
Dataset results
36 results for “ERV”
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [RNA-Seq 2]
GEO Series GSE233826. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ChIP-Seq 2]
GEO Series GSE129136. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ChIP-Seq]
GEO Series GSE129135. Homo sapiens. 80 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions
GEO Series GSE200839. Homo sapiens; Mus musculus. 115 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas
GEO Series GSE128745. Homo sapiens. 210 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [RNA-seq]
GEO Series GSE200837. Mus musculus; Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
DNA Demethylation promotes ERV expression and activation of immune signaling in renal cell cancer cells
GEO Series GSE142381. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [RNA-Seq]
GEO Series GSE117446. Homo sapiens. 96 samples. Type: Expression profiling by high throughput sequencing; Other.
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [WGBS]
GEO Series GSE233830. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
Dominant role of DNA methylation over H3K9me3 in ERV silencing during embryonic endoderm development [RNA-Seq]
GEO Series GSE139126. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
ALV-like ERV DNA sequences
<p>These sequences correspond to ERVs extracted from genomic and wgs data from published genomes.</p> <p>Naming is as follows: in Alectoris-magna2-1, first is the host species, then followed by the contig number (the contigs with matches were asigned a natural (1,2,3) number from lowest to highest ID number) and ending in a second number to identify individual insertions if there were more than one in the same contig, corresponding the lower numbers to the lowest start position in the contig. This means Alectoris-magna1 and Alectoris-magna2-1 are in different contigs from the same species; while Alectoris-magna2-1 and Alectoris-magna2-2 are two different ERVs in the same contig.</p> <p>These sequences are associated with paper "Comparison of Endogenous Alpharetroviruses (ALV-like) across Galliform Species: New Distant Proviruses" (<a href="https://doi.org/10.3390/microorganisms12010086">https://doi.org/10.3390/ microorganisms12010086)</a></p> <p>Further details about genes and regions present in each ERV, as well as genome location, ORF integrity and other information can be found in the research paper above.</p>
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [T18-tissue RNA-Seq]
GEO Series GSE233829. Mus musculus. 50 samples. Type: Expression profiling by high throughput sequencing.
Long noncoding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function [RNA-Seq]
GEO Series GSE93280. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Long noncoding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function
GEO Series GSE93282. Homo sapiens; Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Long noncoding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function [ChIRP-Seq]
GEO Series GSE93281. Homo sapiens; Mus musculus. 6 samples. Type: Other.
KAP1 regulates ERVs in differentiated human cells and contributes to innate immune control
GEO Series GSE114998. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
TNRC18 recognizes H3K9me3 to mediate transposable elements silencing at ERV regions [CAGE-seq]
GEO Series GSE205505. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Evaluation of TET1 non-catalytic functions reveals DNA demethylation independent gene and ERV regulation
GEO Series GSE183465. Mus musculus. 30 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA catabolism restricts ERV expression and functionalization [WGBS]
GEO Series GSE315245. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
H3.3 deposition at endogenous retroviruses and ERV reactivation in Daxx knock-out embryonic stem cells
GEO Series GSE70967. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.