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Abundance of holothurians (Echinodermata: Holothuroidea) in the Rowley Shoals, Australia, in 2018 and 2023
This dataset represents the first island-scale compilation of sea cucumber (Echinodermata: Holothuroidea) abundance data across all three protected atolls of the Rowley Shoals in the northwest coast of Australia. We specifically quantified holothurian abundance by doing standardized benthic surveys (SCUBA visual census along 50-meter transects) across 34 sites in both 2018 and 2023 as follows: Clerke Reef (n=18 sites), Imperieuse Reef (n=10 sites), and Mermaid Reef (n=6 sites). Given that many species here documented are listed as threatened or vulnerable by the IUCN, this dataset will help inform research and management efforts to protect these unique species and reef ecosystems.
Fig. 1 in Resolving the Ophioderma longicauda (Echinodermata: Ophiuroidea) cryptic species complex: five sisters, three of them new
Fig. 1. Phylogenetic relationships and distribution of species of Ophioderma Müller & Troschel, 1840 in the Northeast and Tropical Atlantic Ocean and the Mediterranean Sea. A. Simplified phylogenetic relationships among species of Ophioderma described in this study, modified from Weber et al. (2019). Summary of reproductive strategy: S = broadcast spawner; B = brooder. Correspondence between species names, nuclear genetic clusters and COI mitochondrial lineages is summarized from Boissin et al. (2011) and Weber et al. (2019). C6 is tentatively assigned to O. zibrowii sp. nov. because it occurs far from the type locality and brooding species are expected to have low dispersal rates, leading to low gene flow between populations. B. Distribution of species of Ophioderma in the Northeast and Tropical Atlantic Ocean. C. Distribution of species of Ophioderma in the Mediterranean Sea.
Fig. 5 in Three New Species of Dendrogaster (Crustacea: Ascothoracida) Infecting Goniasterid Sea-Stars (Echinodermata: Asteroidea) from Japan
Fig. 5. Dendrogaster tobasuii sp. nov., allotype male, total length ca. 6 mm, NSMT-Cr 26861, removed from the main branch of holotype female. A, right lateral view (arrowhead indicating point of breakage of isolated left posterior process); B, isolated left posterior process; C, main body, left lateral view (long setae of thoracic limbs and furca omitted); D, right antennule, medial view; E, left first thoracic limb (thoracopod 2), lateral view. Abbreviations: ab, abdominal segments; bs, basis; cg, claw guard; cl, terminal claw; cx, coxa; en, endopod; ex, exopod; fr, furcal rami; fs, fusion seam; I–IV, segment numbers; mx, second maxillae; sp, rudimentary proximal sensory process; th, thoracomeres.
Fig. 7 in Three New Species of Dendrogaster (Crustacea: Ascothoracida) Infecting Goniasterid Sea-Stars (Echinodermata: Asteroidea) from Japan
Fig. 7. Dendrogaster nagasakimaruae sp. nov., A–D, holotype female, mantle size 22.0 mm, NSMT-Cr 26878, removed from coelomic cavity of Nymphaster euryplax (R 60.0 mm, r 14.6 mm), East China Sea southeast of Danjo Islands, Nagasaki Prefecture (31°51.73′N, 128°29.13′E), 247–257 m depth. A, whole animal, dorsal view; B, linear scheme to indicate a pattern of mantle branching; C, left antennule, medial view; D, second maxillae, posterior view. E–F, allotype male, total length 4.5 mm, NSMT-Cr 26879, removed from the main branch of holotype female. E, whole animal, right lateral view; F, abdomen. Abbreviations: b1a, anterior primary branches; b2a, anterior secondary branches; b3a, anterior tertiary branches; b1p, posterior primary branches; b2p, posterior secondary branches; bl, basal lobe; cg, claw guard; cl, terminal claw; fr, furcal rami; fs, fusion seam; I–IV, segment numbers; mb, main branches; mp, middle piece; pp, posterior processes; sp, rudimentary proximal sensory process.
Fig. 4 in Three New Species of Dendrogaster (Crustacea: Ascothoracida) Infecting Goniasterid Sea-Stars (Echinodermata: Asteroidea) from Japan
Fig. 4. Dendrogaster tobasuii sp. nov., holotype female, mantle size 59.9 mm, NSMT-Cr 26860, removed from coelomic cavity of Mediaster arcuatus (unmeasured), Kumano-nada Sea off Owase, Mie Prefecture, Pacific coast of central Japan, about 300 m depth. A, whole animal, dorsal view; B, linear scheme to indicate a pattern of mantle branching; C, left antennule, medial view; D, fourth segment of right antennule, lateral view; E, second maxillae. Abbreviations: b1a, anterior primary branches; b2a, anterior secondary branches; b3a, anterior tertiary branches; b1p, posterior primary branches; cg, claw guard; cl, terminal claw; fs, fusion seam; I–IV, segment numbers; mb, main branches; mp, middle piece; sp, rudimentary proximal sensory process.
Fig. 3 in Three New Species of Dendrogaster (Crustacea: Ascothoracida) Infecting Goniasterid Sea-Stars (Echinodermata: Asteroidea) from Japan
Fig. 3. Dendrogaster komatsuae sp. nov., nauplius, carapace length 0.87 mm, from holotype female. A, whole animal, ventral view; B, left portion of body, ventral view. Abbreviations: a1, antennule; a2, antenna; md, mandible. Scale bar=0.3 mm.
Fig. 2 in Three New Species of Dendrogaster (Crustacea: Ascothoracida) Infecting Goniasterid Sea-Stars (Echinodermata: Asteroidea) from Japan
Fig. 2. Dendrogaster komatsuae sp. nov., holotype female, mantle size 46.3 mm, NSMT-Cr 26858, removed from coelomic cavity of Lithosoma japonica (R 50.0 mm, r 25.3 mm), TAMBL-EC10, Kumano-nada Sea off Owase, Mie Prefecture, Pacific coast of central Japan, about 300 m depth. A, whole animal, dorsal view; B, linear scheme to indicate a pattern of mantle branching; C, left anterior branches, unfurled; D, left antennule, medial view; E, third and fourth segments of right antennule (terminal claw missing), lateral view; F, second maxillae. Abbreviations: b1a, anterior primary branches; b2a, anterior secondary branches; bp, posterior branches; b1p, posterior primary branches; cg, claw guard; cl, terminal claw; eb, extra branch; fs, fusion seam; I–IV, segment numbers; mb, main branches; mp, middle piece; sp, rudimentary proximal sensory process; tb, terminal branch.
Fig. 2. Psolus tessellatus Koehler, 1896. A. Dorsal scale. B in Redescription of Psolus tessellatus Koehler, 1896 (Echinodermata, Holothuroidea) with neotype designation
Fig. 2. Psolus tessellatus Koehler, 1896. A. Dorsal scale. B. Detail of dorsal scale. C. Plates of ventral sole. D. Rods of large tube feet. E. End plate of large tube feet. F. End plate of small tube feet. G. Perforated plates at the base of the large tube feet.
Fig. 1. Psolus tessellatus Koehler, 1896. A. Dorsal view. B. Buccal cone. C. Anal cone. D in Redescription of Psolus tessellatus Koehler, 1896 (Echinodermata, Holothuroidea) with neotype designation
Fig. 1. Psolus tessellatus Koehler, 1896. A. Dorsal view. B. Buccal cone. C. Anal cone. D. Ventral view.
Fig. 38 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 38. Fossil lateral arm plates (LAPs) of ophiacanthid brittle stars in external (a) and internal (b) views. 1-4. Ophiojagtus irimurai gen. et sp. nov. from the early Kimmeridgian (Late Jurassic) of the Pointe du Chay, France. 1. GZG.INV.78808 (holotype), proximal LAP. 2. GZG.INV.78809 (paratype), median LAP. 3. GZG.INV.78810 (paratype), median LAP. 4. GZG.INV.78811 (paratype), distal LAP. 5-7. Ophiojagtus acklesi gen. et sp. nov. from the late Aptian (Early Cretaceous) of Wizard Way, Texas. 5. GZG.INV.78814 (holotype), proximal LAP. 6. GZG.INV.78815 (paratype), median to distal LAP. 7. GZG.INV.78816 (paratype), proximal LAP. 8. Ophiojagtus sp. 1 from the early Cenomanian (Late Cretaceous) of Waco, Texas; proximal LAP. 9-10. Ophiojagtus alternatus (Kutscher & Jagt, 2000) comb. nov. from the early late Maastrichtian (Late Cretaceous) of Haccourt, Belgium. 9. NHMM 2012 060, proximal to median LAP. 10. NHMM 2012 061, proximal LAP. One common scale bar per species.
Fig. 31 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 31. Lateral arm plates (LAPs) of fossil and Recent ophiacanthid brittle stars in external (a) and internal (b) views. 1-4. Ishidacantha fuersichi gen. et sp. nov. from the Callovian (Middle Jurassic) of Jumara, India. 1. GZG.INV.78728 (holotype), proximal LAP. 2. GZG.INV.78729 (paratype), proximal LAP. 3. GZG.INV.78730 (paratype), median LAP. 4. GZG.INV.78731 (paratype), distal LAP. 5-6. Ishidacantha trispinosa (Hess, 1965) comb. nov. from the early Oxfordian (Late Jurassic) of Longecombe, France. 5. NHMB M11222, proximal LAP. 6. NHMB M11223, distal LAP. 7-9. Ophiomitrella conferta (Koehler, 1922), Recent. 7. Proximal LAP. 8. median LAP. 9. distal LAP. 10-12. Ophiomitrella? sp. 1 from the Callovian of Bauer-Wehrland, Germany. 10. GZG.INV.78735, proximal LAP. 11. GZG.INV.78736, median LAP. 12. GZG.INV.78737, distal LAP. One common scale bar per species.
Fig. 30 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 30. Fossil lateral arm plates (LAPs) of ophiacanthid brittle stars in external (a) and internal (b) views. 1-3. Dermacantha sp. nov. innom. from the Bajocian-Bathonian boundary of Touert, France. 1. GZG.INV.78714, proximal LAP. 2. GZG.INV.78715, median LAP. 3. GZG.INV.78716, distal LAP. 4-6. Dermacantha carli gen. et sp. nov. from the late Oxfordian (Late Jurassic) of the Plettenberg, Germany. 4. GZG.INV.78718 (holotype), proximal LAP. 5. GZG.INV.78719 (paratype), median LAP. 6. GZG. INV.78720 (paratype), distal LAP. 7-9. Ishidacantha hirokoae gen. et sp. nov. from the middle Toarcian (Early Jurassic) of Le Clapier, France. 7. GZG.INV.78723 (holotype), proximal LAP. 8. GZG.INV.78724 (paratype), median LAP. 9. GZG.INV.78725 (paratype), distal LAP. One common scale bar per species.
Fig. 22 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 22. Lateral arm plates (LAPs) of fossil and Recent ophiacanthid brittle stars in external (a) and internal (b) views. 1-2. Hanshessia sp. from the Callovian (Middle Jurassic) of Jumara, India. 1. GZG. INV.78641, proximal to median LAP. 2. GZG.INV.78642, proximal LAP. 3-4. Ophiocopa spatula Lyman, 1883, Recent. 3. Proximal LAP. 4. Distal LAP. 5. Alternacantha? sp. from the late Pliensbachian (Early Jurassic) of Amellago, Morocco; GZG.INV.78645, proximal LAP. 6. Alternacantha sp. nov. innom. 1 from the middle Toarcian (Early Jurassic) of Le Clapier, France; GZG.INV.78647, proximal to median LAP. 7-8. Alternacantha occulta Thuy & Meyer, 2013, from the early Bajocian (Middle Jurassic) of Longwy, France. 7. GZG.INV.78648, proximal LAP. 8. GZG.INV.78649, distal LAP. 9-10. Alternacantha sp. nov. innom. 2 from the Callovian (Middle Jurassic) of Jumara, India. 9. GZG.INV.78652, proximal to median LAP. 10. GZG.INV.78653, median LAP. One common scale bar per species.
Fig. 26 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 26. Fossil lateral arm plates (LAPs) of ophiacanthid brittle stars in external (a) and internal (b) views. 1-3. Dermocoma faberi sp. nov. from the Hettangian (Early Jurassic) of Vance, Belgium. 1. MnhnL HE408 (holotype), proximal LAP. 2. MnhnL HE409 (paratype), median LAP. 3. MnhnL HE410 (paratype), distal LAP. 4-6. Dermocoma potti sp. nov. from the late Pliensbachian (Early Jurassic) of Feuguerolles, France. 4. GZG.INV.78675 (holotype), proximal LAP. 5. GZG.INV.78676 (paratype), median LAP. 6. GZG. INV.78677 (paratype), distal LAP. 7-8. Dermocoma toarcensis (Hess, 1962) comb. nov. from the late Toarcian (Early Jurassic) of Seewen, Switzerland. 7. NHMB M11216, proximal LAP. 8. NHMB M11217, distal LAP. 9-11. Dermocoma longwyensis sp. nov. from the early Bajocian (Middle Jurassic) of Longwy, France. 9. GZG.INV.78679 (holotype), proximal LAP. 10. GZG.INV.78680 (paratype), median LAP. 11. GZG.INV.78681 (paratype), distal LAP. One common scale bar per species.
Fig. 19 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 19. Fossil skeletal plates of ophiacanthid brittle stars; lateral arm plates (LAPs) in external (a) and internal (b) views. 1-2. Ophiacantha sp. nov. innom 3 from the middle Albian (Early Cretaceous) of Folkestone, Great Britain. 1. GZG.INV.78602, proximal LAP. 2. GZG.INV.78603, distal LAP. 3-5. Ophiacantha reginae sp. nov. from the late Campanian (Late Cretaceous) of Lägerdorf-Alsen, Germany. 3. GZG.INV.78605 (holotype), proximal LAP. 4. GZG.INV.78606 (paratype), median LAP. 5. GZG.INV.78607 (paratype), distal LAP. 6-9. Ophiacantha steffenschneideri sp. nov. from the Rupelian (Oligocene) of Bad Freienwalde, Germany. 6. GZG.INV.78609 (holotype), proximal LAP. 7. GZG.INV.78610 (paratype), median LAP. 8. GZG.INV.78611 (paratype), distal LAP. 9. GZG. INV.78612 (paratype), arm spine. 10-12. Ophiogaleus sp. nov. innom 1 from the late Sinemurian to early Pliensbachian (Early Jurassic) of the Glasenbach Gorge, Austria. 10. NHMW 2012/0137/0017, proximal LAP. 11. NHMW 2012/0137/0018, proximal to median LAP. 12. NHMW 2012/0137/0019, proximal to median LAP. One common scale bar per species except for 9.
Fig. 15 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 15. Fossil lateral arm plates (LAPs) of ophiacanthid brittle stars in external (a) and internal (b) views. 1-3. Geromura teckliformis gen. et sp. nov. from the late Valanginian (Early Cretaceous) of the Ternberg Nappe, Austria. 1. NHMW 2012/0138/0005 (holotype), proximal LAP. 2. NHMW 2012/0138/0006 (paratype), median LAP. 3. NHMW 2012/0138/0007 (paratype), distal LAP. 4-6. Krohcoma mira gen. et sp. nov. from the late Sinemurian to early Pliensbachian (Early Jurassic) of the Glasenbach Gorge, Austria. 4. NHMW 2012/0137/0013 (holotype), proximal LAP. 5. NHMW 2012/0137/0014 (paratype), median LAP. 6. NHMW 2012/0137/0015 (paratype), distal LAP. 7-8. Krohcoma sp. nov. innom from the late Bathonian (Middle Jurassic) of Jumara, India. 7. GZG.INV.78574, proximal LAP. 8. GZG.INV.78575, median to distal LAP. 9-12. Krohcoma ampla gen. et sp. nov. from the early Kimmeridgian of the Pointe du Chay (9-10), France, and the late Kimmeridgian of Trancoso, Portugal (11-12). 9. GZG.INV.78577 (holotype), proximal LAP. 10. GZG.INV.78578 (paratype), median LAP. 11. GZG.INV.78579 (paratype), median LAP. 12. GZG.INV.78580 (paratype), distal LAP. One common scale bar per species is given.
Fig. 13 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 13. Lateral arm plates (LAPs) of fossil and Recent ophiacanthid brittle stars in external (a) and internal (b) views. 1-3. Ophiotoma incredibilis sp. nov. from the latest Aptian to earliest Albian (Early Cretaceous) of Blake Nose, NE Atlantic. 1. GZG.INV.78549 (holotype), proximal LAP. 2. GZG. INV.78550 (paratype), median LAP. 3. GZG.INV.78551 (paratype), distal LAP. 4. Ophiolimna antarctica (Lyman, 1879), Recent, proximal LAP. 5-6. Ophiolimna perfida (Koehler, 1904), Recent. 5. Proximal LAP. 6. distal LAP. 7-8. Ophiolimna tiamatia sp. nov. from the late Sinemurian to early Pliensbachian (Early Jurassic) of the Glasenbach Gorge, Austria. 7. NHMW 2012/0137/0010 (holotype), proximal LAP. 8. NHMW 2012/0137/0011 (paratype), median LAP. 9-12. Ophiolimna malagasica sp. nov. from the Bathonian (Middle Jurassic) of Jumara, India. 9. GZG.INV.78553 (holotype), proximal LAP. 10. GZG.INV.78554 (paratype), median LAP. 11. GZG.INV.78555 (paratype), median LAP. 12. GZG. INV.78556 (paratype), distal LAP. One common scale bar per species is given.
Fig. 34 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 34. Lateral arm plates (LAPs) of fossil and Recent ophiacanthid brittle stars in external (a) and internal (b) views. 1-4. Ophioleviathan watsoni gen. et sp. nov. from the late Sinemurian to early Pliensbachian (Early Jurassic) of the Glasenbach Gorge, Austria. 1. NHMW 2012/0137/0024 (holotype), proximal LAP. 2. NHMW 2012/0137/0025 (paratype), proximal LAP. 3. NHMW 2012/0137/0026 (paratype), median LAP. 4. NHMW 2012/0137/0027 (paratype), distal LAP. 5-7. Manfredura curvata (Kutscher & Jagt, 2000) comb. nov. from the early Maastrichtian (Late Cretaceous) of Rügen, Germany. 5. GZG.INV.78759, proximal LAP. 6. GZG.INV.78760, median LAP. 7. GZG.INV.78761, distal LAP. 8-9. Ophiomitra valida Lyman, 1869, Recent. 8. Proximal LAP. 9. Median LAP. One common scale bar per species.
Fig. 12 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 12. Lateral arm plates (LAPs) of fossil and Recent ophiacanthid brittle stars in external (a) and internal (b) views. 1. Ophiotoma assimilis Koehler, 1904, Recent, proximal LAP. 2-3. Ophiotoma megatreta (H.L. Clark, 1911), Recent. 2. Proximal LAP. 3. Median LAP. 4. Ophiotoma sp. nov. innom. from the late Sinemurian to early Pliensbachian (Early Jurassic) of the Glasenbach Gorge, Austria; NHMW 2012/0137/0009, median LAP. 5-7. Ophiotoma vadosa sp. nov. from the early Pliensbachian (Early Jurassic) of Blockley, Great Britain. 5. GZG.INV.78541 (holotype), proximal LAP. 6. GZG.INV.78542 (paratype), median LAP. 7. GZG.INV.78543 (paratype), distal LAP. 8-10. Ophiotoma charlottae sp. nov. from the early Kimmeridgian of the Pointe du Chay, France. 8. GZG.INV.78545 (holotype), proximal LAP. 9. GZG.INV.78546 (paratype), proximal to median LAP. 10. GZG.INV.78547 (paratype), distal LAP. One common scale bar per species is given.
Fig. 16 in Temporary expansion to shelf depths rather than an onshore-offshore trend: the shallow-water rise and demise of the modern deep-sea brittle star family Ophiacanthidae (Echinodermata: Ophiuroidea)
Fig. 16. Skeletal plates of fossil and Recent ophiacanthid brittle stars; lateral arm plates (LAPs) in external (a) and internal (b) views. 1-3. Ophiotreta durbanensis (Mortensen, 1933), Recent. 1. Proximal LAP. 2. Distal LAP. 3. Arm spine. 4. Ophiotreta valenciennesi (Lyman, 1879), Recent; proximal to median LAP. 5-6. Ophiopristis procera (Koehler, 1904), Recent. 5. Proximal LAP. 6. Distal LAP. 7-10. Ophiotreta stefaniae sp. nov. from the late Oxfordian (Late Jurassic) of the Plettenberg, Germany. 7. GZG.INV.78583 (holotype), proximal LAP. 8. GZG.INV.78584 (paratype), proximal LAP. 9. GZG. INV.78585 (paratype), median LAP. 10. GZG.INV.78586 (paratype), distal LAP. One common scale bar per species is given, except for 3.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.