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ShareScore release 0.9.0
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7 results for “Ectocarpus”
Supplementary data to "Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus"
<p>This data set contains supplementary data related to the paper: “Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation”: https://onlinelibrary.wiley.com/doi/10.1111/mec.16766</p> <p>Metagenome.zip:<br>This archive contains the reconstructed genomes of the different bacterial bins. The ".gbk" file was used for the reconstruction of metabolic networks. The ".fsa" and ".gff" files were used for "read mapping".</p> <p>Metabolic_networks.zip:<br>This archive contains all bacterial networks in the "padmet" format (see Aite et al. 2018). Furthermore, there is one file containing all gene-reaction associations (for all bins).</p> <p>Expression_data.zip:<br>This file contains algal gene expression data, bacterial gene expression data (number of reads mapping to each feature in each sample), and, lastly, the summarized bacterial expression per metabolic reaction. </p>
Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae) - test dataset
<p><strong>Objectives :</strong></p> <p>Examine salinity tolerance and adaptations to low salinities in a freshwater strain of Ectocarpuson physiological and molecular levels.</p> <p><strong>Cohort :</strong></p> <p>Two clonal strains of Ectocarpus sp. (Ectocarpales, Phaeophyceae), the genome-sequenced marine strain (MS) (accession CCAP 1310/4, origin San Juan de Marcona, Peru) and a freshwater strain (FWS, accession CCAP 1310/196, origin Hopkins River Falls, Victoria, Australia) were used.</p> <p><strong>Mass spectrometer :</strong></p> <p><br> Gas chromatography-mass spectrometry (GC-MS) as described by Ritteret al.(2008) : samples were analysed with a Hewlett-Packard 5873 Mass Selective Detector interfaced to a Hewlett-Packard 6890 Series+ gas chromatograph (Agilent, Les Ullis, France).</p>
Data from: Evolution and maintenance of haploid-diploid life cycles in natural populations: the case of the marine brown alga Ectocarpus
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Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 2
GEO Series GSE146366. Ectocarpus sp. Ec32. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, experiment 1
GEO Series GSE146359. Ectocarpus sp. Ec32. 39 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Genome-wide analysis of chromatin states of Ectocarpus sporophytes and gametophytes, 2020
GEO Series GSE146369. Ectocarpus sp. Ec32. 79 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
A high-resolution transcriptome map of Ectocarpus siliculosus
GEO Series GSE19912. Ectocarpus siliculosus. 16 samples. Type: Expression profiling by genome tiling array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.