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465 results for “Energetics”
Data, scripts, and R Notebook for Carneiro et al 2023. Flight performance and wing morphology in the bat Carollia perspicillata: biophysical models and energetics. Integrative Zoology DOI:10.1111/1749-4877.12707
<p>Files provided as supporting information for the paper by Carneiro et al. 2023. Flight performance and wing morphology in the bat <em>Carollia perspicillata</em>: biophysical models and energetics. Integrative Zoology. DOI:10.1111/1749-4877.12707</p> <p>File descriptions</p> <p>ArmTA.txt - Temperature and surface areas for arms of <em>C. perspicillata</em> after flight experiment<br> BodyTA.txt - Temperature and surface areas for body of <em>C. perspicillata</em> after flight experiment<br> HeadTA.txt - Temperature and surface areas for head of <em>C. perspicillata</em> after flight experiment<br> WingTA.txt - Temperature and surface areas for wings (patagium) of <em>C. perspicillata</em> after flight experiment<br> WingMorph.txt - Morphological variables measured in the body and wings of <em>C. perspicillata</em><br> HeatLoss.R - Function to estimate heat loss (Qt)<br> PowFlight.R - Function to estimate minimum power required to fly<br> Script-HeatLoss-FlightPerformance.R - R script with set of analyses performed<br> SupportingInformationFile.docx - R notebook with set of analyses performed, word format<br> SupportingInformationFile.nb.html - R notebook with set of analyses performed, html format<br> SupportingInformationFile.Rmd - R notebook with set of analyses performed (R markdown)</p> <p>For the R scripts (Script-HeatLoss-FlightPerformance.R) and notebook (<br> SupportingInformationFile.Rmd) to work and be compiled, all files need to be copied to the same folder.</p>
MCR LTER: Coral Reef: Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals; data for Kelly et al., 2022 PNAS
Metabolites exuded by primary producers comprise a significant fraction of marine dissolved organic matter, a poorly characterized, heterogenous mixture that dictates microbial metabolism and biogeochemical cycling. We present a foundational untargeted molecular analysis of exudates released by coral reef primary producers using liquid chromatography–tandem mass spectrometry to examine compounds produced by two coral species and three types of algae (macroalgae, turfing microalgae, and crustose coralline algae [CCA]) from Mo’orea, French Polynesia. Of 10,568 distinct ion features recovered from reef and mesocosm waters, 1,667 were exuded by producers; the majority (86%) were organism specific, reflecting a clear divide between coral and algal exometabolomes. These data allowed us to examine two tenets of coral reef ecology at the molecular level. First, stoichiometric analyses show a significantly reduced nominal carbon oxidation state of algal exometabolites than coral exometabolites, illustrating one ecological mechanism by which algal phase shifts engender fundamental changes in the biogeochemistry of reef biomes. Second, coral and algal exometabolomes were differentially enriched in organic macronutrients, revealing a mechanism for reef nutrient-recycling. Coral exometabolomes were enriched in diverse sources of nitrogen and phosphorus, including tyrosine derivatives, oleoyl-taurines, and acyl carnitines. Exometabolites of CCA and turf algae were significantly enriched in nitrogen with distinct signals from polyketide macrolactams and alkaloids, respectively. Macroalgal exometabolomes were dominated by nonnitrogenous compounds, including diverse prenol lipids and steroids. This study provides molecular-level insights into biogeochemical cycling on coral reefs and illustrates how changing benthic cover on reefs influences reef water chemistry with implications for microbial metabolism. This material is based upon work supported by the U.S. National Science Founda
Spatial distributions of Solar Energetic Particle Fe ions at t=12 h
<p>These images are supplementary to Figure 2 of the publication entitled "Solar Energetic Particle drifts and the energy dependence of 1 AU charge states" by S. Dalla, M.S. Marsh, M. Battarbee, accepted by Astrophysical Journal (2016). The paper is also available at https://arxiv.org/abs/1610.05104.</p> <p>In each figure contour plots of locations of Fe ions of charges Q=20, 16, 12 and 8 at time t=12 hr are shown. The first image gives z vs r_xy projections and the second figure y vs x projections, with only particles within 20 degrees of the heliographic equator included in the x-y projections.</p>
Data for "Constraints on the Observability of Energetic Neutral Atoms from the Magnetosphere-Atmosphere Interactions at Callisto and Europa" by Haynes et al.
<p>Accompanying data products for publication entitled "Constraints on the Observability of Energetic Neutral Atoms from the Magnetosphere-Atmosphere Interactions at Callisto and Europa". The manuscript was submitted to JGR Space Physics shortly after upload.</p> <p>Data includes all simulation outputs that are depicted in this work, both for the AIKEF hybrid model (i.e., Figure 4) and the model used to produce synthetic ENA images (Figures 3, 6, 8, 9, 11, A1, and B1). All other figures in the work are used for illustrative purposes and were not generated with simulation output. </p> <p>Information regarding the organization and file structure can be found in H24_data_readme.txt , as well as which dataset corresponds to which figure. Any inquiries, questions, or comments may be addressed through the email associated with this data publication.</p>
Highly energetic rockfalls: Dataset of the 2015 event from the Mel de la Niva, Switzerland
<p>This is the dataset related to the back analysis of the 2015 rockfall event from the Mel de la Niva Mountain near Evolène village, Valais canton, Switzerland. It includes the digital surface model and orthophoto generated by structure from motion photogrammetry, the video files of the event, the reconstructed 3D trajectories and blocks, the shapefiles containing the rockfall paths segments and deposited blocks, and the simulation results.</p>
Energetic costs increase with faster heating in an aquatic ectotherm: Respirometry data
<p>Using closed chamber respirometry we estimated the aerobic metabolic rate of an aquatic ectotherm, the Atlantic ditch shrimp <em>Palaemonetes varians,</em> under varying thermal conditions. We continuously measured oxygen consumption of shrimp during heating, cooling, and constant temperatures, starting trials at a range of acclimation temperatures and exposing shrimp to a variety of rates of temperature change.</p> <p>Data corrections and associated methodologies are detailed fully in the accompanying manuscript. </p> <p>## Description of the data and file structure</p> <p>Stable temperature trial data found in stable_trials_raw.csv</p> <p>Ramping temperature trial data found in ramping_trials_raw.csv</p> <p>Both datasets include the respirometry data for all temperature trials, with dissolved oxygen concentration corrected for background respiration ("doconc_corr") following the methodology outlined in the associated manuscript. Identification number of the individual is stored under "ID", time from start of trial to end of trial (in minutes) is stored under "time_min" and temperature of the chamber (in degrees Celcius) is stored under "temp_degC".</p>
Transient Optoelectronic Analysis of the Impact of Material Energetics and Recombination Kinetics on the Open-Circuit Voltage of Hybrid Perovskite Solar Cells
<p>This is the data presented in the article 'Transient Optoelectronic Analysis of the Impact of Material Energetics and Recombination Kinetics on the Open-Circuit Voltage of Hybrid Perovskite Solar Cells' published in The Journal of Physical Chemistry C, DOI: 10.1021/acs.jpcc.7b02411.</p>
Energetic trade-offs in migration decision-making, reproductive effort, and subsequent parental care in a long-distance migratory bird
<p>Migratory species trade-off long-distance movement with survival and reproduction, but the spatiotemporal scales at which these decisions occur is relatively unknown. Technological and statistical advances allow fine-scale study of animal decision-making, improving our understanding of possible causes and therefore conservation management. We quantified effects of reproductive preparation during spring migration on subsequent breeding outcomes, breeding outcomes on autumn migration characteristics, and autumn migration characteristics on subsequent parental survival in Greenland white-fronted geese (<em>Anser albifrons flavirostris</em>). These are long-distance migratory birds with a ~50% population decline from 1999 to 2022. We deployed GPS-acceleration devices on adult females to quantify up to five years of individual decision-making throughout the annual cycle. Weather and habitat-use affected time spent feeding and overall dynamic body acceleration (i.e., energy expenditure) during spring and autumn. Geese that expended less energy and fed longer during spring were more likely to successfully reproduce. Geese with offspring expended more energy and fed for less time during autumn, potentially representing adverse fitness consequences of breeding. These behavioural comparisons among Greenland white-fronted geese improve our understanding of fitness trade-offs underlying abundance. We provide a reproducible framework for full annual cycle modelling using location and behaviour data, applicable to similarly studied migratory animals.</p>
FIGURE 6 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 6 Quadratic discriminant function analysis of the (a) spawning energetics, (b) otolith element:Ca ratios and (c) both techniques combined in female Ethmalosa fimbriata sampled at Joal (Senegalese southern coast), Djifer (Saloum River mouth) and Foundiougne (Saloum River middle reaches) from February to October 2014. Ellipsoids encompass c. 50% of a sampling station's data points
FIGURE 4 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 4 Relationships between Ethmalosa fimbriata oocyte dry mass and (a) lipid content, and (b) protein content from fish in southern Senegalese coastal waters. Specimens were sampled at Joal (Senegalese southern coast), Djifer (Saloum River mouth) and Foundiougne (Saloum River middle reaches) from February to October 2014
FIGURE 2 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 2 Ground otolith of a female Ethmalosa fimbriata specimen (total length, LT = 23.1 cm) embedded in epoxy resin. The specimen was sampled at Foundiougne (Sine Saloum, Senegal) in May 2014. The ablation path can be seen along the edge of the otolith's rostrum
FIGURE 1 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 1 The Senegalese southern coast and the Sine Saloum Estuary, including sampling sites (): Joal, Senegalese southern coast; Djifer, Saloum River mouth; Foundiougne, Saloum River middle reaches
FIGURE 3 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 3 Total length–frequency distribution of Ethmalosa fimbriata females with hydrated oocytes. Sampling took place at Joal (Senegalese southern coast), Djifer (Saloum River mouth) and Foundiougne (Saloum River middle reaches) from February to October 2014
FIGURE 7 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 7 Mean (a) Ba:Ca and (b) Sr:Ca ratios of female Ethmalosa fimbriata otoliths in relationship with surface water temperature. Individuals were sampled at Joal (Senegalese southern coast), Djifer (Saloum River mouth) and Foundiougne (Saloum River middle reaches) from February to October 2014
FIGURE 5 in Spawning energetics and otolith microchemistry provide insights into the stock structure of bonga shad Ethmalosa fimbriata
FIGURE 5 (a) Monthly mean (SD; n, sample size) oocyte energy content and (b) boxplots (, median; ⊺, 5th and 95th percentiles;, outliers) of spawning batch energy content of female Ethmalosa fimbriata sampled at Joal (Senegalese southern coast), Djifer (Saloum River mouth) and Foundiougne (Saloum River middle reaches) from February to October 2014. Different lowercase letters indicate significant differences (P <0.05). Movfree, Ovary-free body mass
The impact of solar wind magnetic field fluctuations on the magnetospheric energetics
<p>This dataset provides the results and analysis tools of the manuscript by Ala-Laht et al. "The impact of solar wind magnetic field fluctuations on the magnetospheric energetics". In addition, relevant SWMF simulation input files are included. See ReadMe.txt for information.</p>
Dataset of structural and energetic descriptors for optimized geometries of the pyrene dimer in the S1 state and Jupyter Notebbok used for the unsupervised clustering, analysis and visualization
<p>Geometrical and energy data extracted from a set of 188 optimized geometries for the pyrene dimer in the first excited singlet state at the TD-CAMB3LYP + D3BJ / 6-31G* / C-CPCM(Cyclohexane) level. </p> <p>Coordinates (in xyz format) of the 188 optimized geometries considered.</p> <p>Jupyter notebook used to perform unsupervised clustering and analysis of the available structures.</p>
Data for the research article: "Simulations of Energetic Neutral Atom sputtering from Ganymede in preparation for the JUICE mission"
<p>Data for the research article: "Simulations of Energetic Neutral Atom sputtering from Ganymede in preparation for the JUICE mission"</p>
Economies of scale shape energetics of solitary and group living spiders and their webs
<p>Metabolic scaling, whereby larger individuals use less energy per unit mass than smaller ones, may apply to the combined metabolic rate of group-living organisms as group size increases. Spiders that form groups in high disturbance environments can serve to test the hypothesis that economies of scale benefit social groups.</p> <p>Using solitary and group-living spiders, we tested the hypothesis that spiders exhibit negative allometry between body or colony mass and the standing mass of their webs and whether, and how, such a relationship may contribute to group-living benefits in a cooperative spider.</p> <p>Given the diverse architecture of spider webs—orb, tangle, and sheet-and-tangle, and associated differences in silk content, we first assessed how standing web mass scales with spider mass as a function of web architecture and whether investment in silk differs among web types. As group-living spiders are predominantly found in clades that build the presumably costlier sheet-and-tangle webs, we then asked whether cost-sharing through cooperative web maintenance contributes to a positive energy budget in a social species.</p> <p>We found that larger spiders had a relatively smaller investment in silk per unit mass than smaller ones, but more complex sheet-and-tangle webs contained orders of magnitude more silk than simpler orb or tangle ones. In the group-living species, standing web mass per unit spider mass continued to decline as colony size increased with a similar slope as for unitary spiders. When web maintenance activities were considered, colonies also experienced reduced mass-specific energy expenditure with increasing colony size. Activity savings contributed to a net positive energy balance for medium and large colonies after inputs from the cooperative capture of large prey were accounted for.</p> <p>Economies of scale have been previously demonstrated in animal societies characterized by reproductive and worker castes, but not in relatively egalitarian societies as those of social spiders. Our findings illustrate the universality of scaling laws and how economies of scale may contribute to setting limits on social behaviour and hunting strategies.</p>
Near-inertial wave energetics modulated by background flows in a global model simulation
<p>This data set contains data from a forward global HYCOM simulation (EXPT 19.2) with realistic atmospheric forcing. This is a 4-km simulation with 41 layers. All data is on the native tri-polar grid. Data is stored as netcdf4 classic. The 2D data sets are 7055 x 9000 (lat x lon).</p> <p>More details and context of this data can be found in the article: <a href="https://doi.org/10.1175/JPO-D-21-0130.1">https://doi.org/10.1175/JPO-D-21-0130.1</a>. Please cite this article along with any use of this data.<br> Raja, K. J., Buijsman, M. C., Shriver, J. F., Arbic, B. K., & Siyanbola, O. (2022). Near-Inertial Wave Energetics Modulated by Background Flows in a Global Model Simulation, <em>Journal of Physical Oceanography</em>, <em>52</em>(5), 823-840.</p>
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.