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35 results for “Erwinia”
Erwinia billingiae MYb121
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Erwinia billingiae MYb121, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Erwinia rhapontici BIGb0435
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Erwinia rhapontici BIGb0435, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Erwinia rhapontici BIGb0389
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Erwinia rhapontici BIGb0389, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Metagenome-assembled Genomes of Scandinavium goeteborgense MCPNR19-05 and Erwinia aphidicola MCPNR19-06
<p>Here we provide two fasta files (MCPNR19-05.fa and MCPNR19-06.fa) which represent low-quality metagenome assembled genomes (MAGs) obtained from genomic DNA from Massospora cicadina isolate MCPNR19 azygospores collected from multiple seventeen-year cicada (Magicicada septendecim) June 2019 at Powdermill Nature Reserve, Rector, Pennsylvania.</p> <p>MCPNR19-05.fa = Scandinavium goeteborgense MCPNR19-05, a 1.82 Mb 45.61% complete MAG<br> MCPNR19-06.fa = Erwinia aphidicola MCPNR19-06, a 1.79 Mb 29.31% complete MAG<br> <br> <strong>Raw data availability</strong><br> Sequence reads are deposited under SRA project accessions <a href="https://ncbi.nlm.nih.gov/sra/SRR17553520">SRR17553520</a>-<a href="https://ncbi.nlm.nih.gov/sra/SRR17553526">SRR17553526</a> and BioProject <a href="https://www.ncbi.nlm.nih.gov/bioproject/PRJNA795459">PRJNA795459</a>. These MAGs are metagenomic assemblies obtained from the host Massospora cicadina (BioSample: SAMN24722893). </p>
Data from: Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host - restricted plant pathogen Erwinia tracheiphila
Modern industrial agriculture depends on high density cultivation of genetically similar crop plants, creating favorable conditions for the emergence of novel pathogens with increased fitness in managed compared to ecologically intact settings. Here, we present the genome sequence of six strains of the cucurbit bacterial wilt pathogen Erwinia tracheiphila (Enterobacteriaceae) isolated from infected squash plants in New York, Pennsylvania, Kentucky, and Michigan. These genomes exhibit a high proportion of recent horizontal gene acquisitions, invasion and remarkable amplification of mobile genetic elements, and pseudogenization of ~20% of the coding sequences. These genome attributes indicate that E. tracheiphila recently emerged as a host-restricted pathogen. Furthermore, chromosomal rearrangements associated with phage and transposable element proliferation contributes to substantial differences in gene content and genetic architecture between the six E. tracheiphila strains and other Erwinia species. Together, these data lead us to hypothesize that E. tracheiphila has undergone recent evolution via both genome decay (pseudogenization) and genome expansion (horizontal gene transfer and mobile element amplification). Despite evidence of dramatic genomic changes, the six strains are genetically monomorphic, suggesting a recent population bottleneck and emergence into E. tracheiphila's current ecological niche.
Data from: Horizontal gene acquisitions, mobile element proliferation, and genome decay in the host - restricted plant pathogen Erwinia tracheiphila
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Erwinia Asparaginase After Allergy to PEG-Asparaginase in Treating Young Patients With Acute Lymphoblastic Leukemia
ClinicalTrials.gov study NCT00537030. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Transcriptomic analysis of Erwinia amylovora bacteriophage insensitive mutants
GEO Series GSE291879. Erwinia amylovora. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of the Csr system in Erwinia amylovora
GEO Series GSE128088. Erwinia amylovora. 9 samples. Type: Expression profiling by high throughput sequencing.
Infection of the larval airway epithelium by Erwinia carotovora
GEO Series GSE11444. Drosophila melanogaster. 4 samples. Type: Expression profiling by array.
The stringent response regulator (p)ppGpp mediates virulence gene expression and survival in Erwinia amylovora
GEO Series GSE143324. Erwinia amylovora. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequencing of the adult female fly guts (w1118) with and without oral infection with Pseudomonas entomophila (Pe) or Erwinia carotovora carotovora 15 (Ecc15)
GEO Series GSE128489. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
Asparaginase Erwinia Chrysanthemi With Chemotherapy for the Treatment of High-Risk Adults With Newly Diagnosed Acute Lymphoblastic Leukemia or Lymphoblastic Lymphoma
ClinicalTrials.gov study NCT06918431. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Study to Determine Number of Patients Who Develop High Ammonia Levels After Receiving Recombinant Erwinia Asparaginase
ClinicalTrials.gov study NCT06600659. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Recombinant Erwinia Asparaginase and Venetoclax in Combination With Blinatumomab for the Treatment of Relapsed or Refractory CD19 Positive B-cell Acute Lymphoblastic Leukemia
ClinicalTrials.gov study NCT07133997. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Etoposide, Prednisone, Vincristine, Cyclophosphamide, and Doxorubicin (DA-EPOCH) With or Without Rituximab Plus Recombinant Erwinia Asparaginase (JZP458) for the Treatment of Newly Diagnosed Ph Negati
ClinicalTrials.gov study NCT06738368. IPD Sharing: NO. Countries: 1. Publications: 0.
An Open-Label, Single-Arm, Multicenter Pharmacokinetic Study of Intramuscular Erwinaze® (Asparaginase Erwinia Chrysanthemi)/Erwinase® (Crisantaspase)
ClinicalTrials.gov study NCT02150928. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Intravenous Erwinia Chrysanthemi Asparaginase in Patients With Newly Diagnosed Philadelphia Chromosome Negative Acute Lymphoblastic Leukemia Aged 60 Years or Older
ClinicalTrials.gov study NCT02647190. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Arabidopsis thaliana seedlings: Control vs Erwinia amylovora nicrobial Volatile Organic Compounds
GEO Series GSE223760. Arabidopsis thaliana. 4 samples. Type: Expression profiling by array.
Genome-wide identification of Hfq-regulated small RNAs in the bacterial pathogen Erwinia amylovora
GEO Series GSE53763. Erwinia amylovora. 12 samples. Type: Non-coding RNA profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
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