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14 results for “Exchange networks”
Neural-network-based molecular dynamics simulations reveal that proton transport in water is doubly gated by sequential hydrogen-bond exchange: Neural network potentials training data
<h1>Neural network potentials of an excess proton in bulk water, training data</h1> <p>This dataset contains 2188 configurations labeled at two hybrid DFT levels (revPBE0-D3 and B3LYP-D3).</p> <p>The configurations are given as a single XYZ file: configurations.xyz</p> <p>The box dimensions are written in box.txt</p> <p>The energies for all configurations at a given level of theory are written in energies_LEVEL.txt (one configuration per line)</p> <p>The atomic forces for each configuration at a given level of theory are gathered in a XYZ file: forces_LEVEL.xyz</p> <p>The relative displacements of the Wannier centroids, with respect to the closest oxygen atom, for each configuration at a given level of theory, are in the following XYZ file: wannier-centroids-displacements_LEVEL.xyz</p>
Net ecosystem exchange measurements throughout the 2020 growing season across an N fertilization gradient:Nutrient Network. A cross-site investigation of bottom-up control over herbaceous plant community dynamics and ecosystem function.
This experiment is one implementation of a globally distributed experiment, known as the Nutrient Network. At Cedar Creek, as in over 70 other sites in grasslands around the world, the experiment aims to describe impacts of increased nutrients (nitrogen, phosphorus, potassium, sulfur and other metals) and decreased herbivory (removal of mammals by fencing). Two overarching questions are being explored with these manipulations: 1. To what extent are plant production and diversity co-limited by multiple nutrients in herbaceous-dominated communities? 2. Under what conditions do grazers or fertilization control plant biomass, diversity, and composition? By utilizing identical protocols at diverse grassland sites around the world, NutNet aims to uncover both the generalities in ecosystem functioning, and the contingencies or differences which can obscure those common mechanisms. In addition to the standard NutNet protocol, e247 includes an additional low Nitrogen gradient (1 gram Nitrogen per meter squared per year and 5 grams Nitrogen per meter squared per year in addition to the standard 10 grams Nitrogen per meter squared per year).
Replication Data for: ``Impact of Parameterized Isopycnal Diffusivity on Shelf-Ocean Exchanges under Upwelling-Favorable Winds: Offline Tracer Simulations Augmented by Artificial Neural Network''
<p>This dataset contains the modified MAMEBUS source code, configuration files for the MITgcm and MAMEBUS simulations, model diagnostics used in the paper, and scripts to train the Artificial Neural Networks.</p>
OA eBook Usage Data Exchange Network Business Model Canvas
<p>This initial business model canvas was created to inform technical and governance roadmap discussions pertaining to the data exchange elements of the Developing a Data Trust for Open Access Ebook Usage project.</p>
Figure 2 in Herbarium specimens reveal the exchange network of British and Irish botanists, 1856-1932
Figure 2 An example of the network of botanical exchanges. Square nodes represent women. Red nodes are members of the Watson Botanical Exchange Club. Blue nodes are members of the Botanical Exchange Club. Purple nodes are members of both clubs. The node's area is proportion to the number of specimens collected by that collector during the period. The width of the link is proportional to the number of links between those two nodes. (A) The whole network. (B) Detail of the centre of the network. The network was laid out using the Harel–Koren Fast Multiscale algorithm.
Figure 4 A in Herbarium specimens reveal the exchange network of British and Irish botanists, 1856-1932
Figure 4 A histogram showing the proportions of men and women in the network who have different numbers of links.
Figure 3 in Herbarium specimens reveal the exchange network of British and Irish botanists, 1856-1932
Figure 3 Change in the network parameters with time. The bottom chart plots the history of the national botanical clubs of the period. The terms of the secretaries of the Botanical Exchange Club are marked. Abbreviations: JB — J.G. Baker, HT — H. Trimen.
Figure 1 in Herbarium specimens reveal the exchange network of British and Irish botanists, 1856-1932
Figure 1 The schema used for cleaning the individual's names in the dataset.
Data for manuscript: Sediment Routing and Floodplain Exchange (SeRFE): A spatially explicit model of sediment balance and connectivity through river networks
<p>Data used to calibrate and run the SeRFE model in the applications presented in the manuscript "Sediment Routing and Floodplain Exchange (SeRFE): A spatially explicit model of sediment balance and connectivity through river networks."</p>
Oncology Research Information Exchange Network in Improving Genetic Screening Rate in Patients With Cancer
ClinicalTrials.gov study NCT03348137. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Oncology Research Information Exchange Network (ORIEN) Lung Cancer Study
ClinicalTrials.gov study NCT02803333. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Network rewiring: physiological consequences of reciprocally exchanging the physical locations and growth-phase-dependent expression patterns of the Salmonella fis and dps genes. [RNA-Seq]
GEO Series GSE152227. Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344. 12 samples. Type: Expression profiling by high throughput sequencing.
Network rewiring: physiological consequences of reciprocally exchanging the physical locations and growth-phase-dependent expression patterns of the Salmonella fis and dps genes. [ChIP-Seq]
GEO Series GSE152225. Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Network rewiring: physiological consequences of reciprocally exchanging the physical locations and growth-phase-dependent expression patterns of the Salmonella fis and dps genes.
GEO Series GSE152228. Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344. 21 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.