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7 results for “FAVA”
Combined network file for "FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data"
<p><strong>Combined network from scRNA-seq and proteomics data</strong></p> <p>Given the complementary nature of the networks based on scRNA-seq and proteomics data individually, we decided to combine them into a single network. As the Pearson Correlation Coefficient scores from FAVA cannot be assumed to be directly comparable across the two networks, we converted them to probabilistic scores based on the KEGG benchmarks. These calibrated scores were then combined to produce a single network based on scRNA-seq as well as proteomics data. As should be expected, this network outperforms the individual networks, combining the best aspects of both.</p>
Supplementary table of PRIDE datasets analyzed for "FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data"
<p>Our proteomics dataset comes from The PRoteomics IDEntifications (PRIDE) database, the world’s largest data repository of mass spectrometry-based proteomics data. Specifically, we used 633 human proteomics project experiments with a total of 32,546 runs and reanalyzed them using ionbot with an FDR threshold of 0.01 [16], resulting in a total of 154,885,151 peptide spectrum matches for 18,846 proteins. Here is the full list of projects, runs, and general statistics.</p>
Datasets for crop, soil properties and soil greenhouse gas emissions from an intercropping experiment with broccoli and fava bean
<p>Datasets with all properties measured during three crop cycles of an experiment developed to assess the efficiency of intercropping between broccoli and fava bean to enhance crop productivity, soil health and carbon sequestration and storage and reduce soil greenhouse gas emissions and the use of external inputs. </p> <p>We compared a broccoli monocrop (<em>Brassica oleracea var. italica</em> Plenck), a fava bean monocrop (<em>Vicia faba</em> L.) and different broccoli-fava bean intercropping systems in three winter crop cycles: 2018/2019, 2019/2020 and 2020/2021. The intercropping systems were: i) mixed intercropping (alternation within the same row of broccoli and fava bean plants), row intercropping 1:1 (combination of alternate rows of broccoli - fava bean) and row intercropping 2:1 (combination of two rows of the broccoli crop and one row of fava bean).</p>
Amino Acid Bioavilability of Fava Beans
ClinicalTrials.gov study NCT05047757. IPD Sharing: NO. Countries: 1. Publications: 1.
The Effects of MediDrink Platinum+ and Fava Bean Protein Hydrolysate on Fitness in an Aged Population
ClinicalTrials.gov study NCT07322653. IPD Sharing: NO. Countries: 1. Publications: 0.
Protein Quality of Fava Bean and Honey Chlorella in Humans
ClinicalTrials.gov study NCT06436937. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Non-heme Iron Absorption From Single Meals of Fava Bean Protein, Beef Protein and Cod Protein
ClinicalTrials.gov study NCT05392816. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.