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28 results for “Fagus sylvatica L.”
Microsatellite genotype data and leaf morphological data of the publication "Bidirectional gene flow between Fagus sylvatica L. and F. orientalis Lipsky despite strong genetic divergence"
<p>These data sets were used for analyses in the publication "Bidirectional gene flow between <em>Fagus sylvatica</em> L. and<em> F. orientalis</em> Lipsky despite strong genetic divergence" accepted in Forest Ecology and Management <a href="https://www.sciencedirect.com/journal/forest-ecology-and-management/vol/537/suppl/C">Volume 537</a>, 1 June 2023, 120947, <a href="https://doi.org/10.1016/j.foreco.2023.120947">https://doi.org/10.1016/j.foreco.2023.120947</a></p> <p>For details about the data, please read the corresponding ReadMe files.</p>
Text-fig. 7. a–d: Zelkova zelkovifolia. a: Fruiting twig, Oriolo MSF 639. b: Oriolo MSF 685. c: Oriolo MSF 859. d: Oriolo MSF 947. e: Unknown leaf fragment resembling Lonicera nigra L., 1753, Oriolo MSF 859. f: Crataegus aff. monogyna Oriolo MSF 639-1. g: Fagus aff. sylvatica Oriolo MSF 648. Scale bars 10 mm (a–g). in The Late Early Pleistocene Flora Of Oriolo, Faenza (Italy): Assembly Of The Modern Forest Biome
Text-fig. 7. a–d: Zelkova zelkovifolia. a: Fruiting twig, Oriolo MSF 639. b: Oriolo MSF 685. c: Oriolo MSF 859. d: Oriolo MSF 947. e: Unknown leaf fragment resembling Lonicera nigra L., 1753, Oriolo MSF 859. f: Crataegus aff. monogyna Oriolo MSF 639-1. g: Fagus aff. sylvatica Oriolo MSF 648. Scale bars 10 mm (a–g).
Supplementary material for Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
<p>Database and figures related to the results that are presented in the manusciript Montemagno et al. that will be submitted as research paper in the journal Copernicus/Biogeosciences.</p> <p>Title of the submission: Dynamics of Rare Earth Elements and associated major cations during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation.</p> <p>Authorship: </p> <p>Alessandro Montemagno<sup>1,3</sup>, Christophe Hissler<sup>1</sup>, Johanna Ziebel<sup>2</sup>, Victor Bense<sup>3</sup>, Laurent Pfister<sup>1</sup>, Adriaan J. Teuling<sup>3</sup></p> <p><sup>1</sup>CATchment and ecohydrology research group (CAT/ENVISION/ERIN), Luxembourg Institute of Science and Technology, Belvaux, 4408, Luxembourg</p> <p><sup>2</sup>Biotechnologies and Environmental Analytics Platform (BEAP/ERIN), Luxembourg Institute of Science and Technology, Belvaux, 4408, Luxembourg</p> <p><sup>3</sup>Department of Environmental Sciences, subdivision Hydrology and Quantitative Water Management (HWQM), Wageningen University and Research, Droevendaalsesteeg 4, Wageningen, 6708 PB, The Netherlands</p> <p><em>Correspondence: </em>Alessandro Montemagno (<a href="mailto:alessandro.montemagno@list.lu">alessandro.montemagno@list.lu</a>), Christophe Hissler (<a href="mailto:christophe.hissler@list.lu">christophe.hissler@list.lu</a>)</p>
Data from: Historic land use modifies impacts of climate and isolation in rear edge European beech (Fagus sylvatica L.) populations
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Simulated and observed timings of leaf senescence for <em>Fagus sylvatica</em> (L.) at selected European sites
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Interactive effects of sun-shade and dry-wet treatments on seedlings of four beech (Fagus sylvatica L.) provenances
<p>We tested whether seedlings of four beech provenances, from contrasting edaphoclimatic environments, expressed differences in trait responses to imposed water stress under sun and shade treatments. Populations from the southern range margin were expected to display greater water-stress tolerance and core populations faster growth rates in the absence of abiotic limitations.</p> <p>Seedlings germinated under controlled conditions and were grown under controlled light-x-watering treatment combinations comprising shade/sun (main plot factor) and well-watered/water-limited (split-plot factor) groups. Beech seedlings remained under the experimental conditions from May through to September.</p> <p>Multiple sampling of growth (height, branching, number of leaves, leaf length, and root collar diameter), and leaves traits reflecting photosynthetic productivity and stress tolerance were made during the spring and summer. Leaf level gas exchange was measured by IRGA, leaf pigmentation by multiple optical sensors, leaf water potential with a pressure chamber, as well as plants and leaf morphological traits at the end of the experiment.</p> <p>Methods and Results are described in detail in the manuscript: Title: <strong>Seedlings from marginal and core populations of European beech (<em>Fagus sylvatica </em>L.) respond differently to imposed drought and shade. </strong>Authors: Fang Wang, David Israel, José-Alberto Ramírez-Valiente, David Sánchez-Gómez, Ismael Aranda, Pedro J Aphalo, T Matthew Robson.</p> <p>Files added are:"OverallData.xlsx" are the raw leaf level data collected in the experiment for the traits recorded, arranged in spreadsheets according to measurement type. Sheets are: "SoilMoistureRData", "PARData", "GasExchangeFigureData", "LeafObsData", "GrowthData", "LeafTraitsFigureData".</p> <p>"SummaryData.xlsx" are the individual replicate plot level summary data (calculated from the OverallData in R) for use in statistical analyses. Sheets are: "comparison", "GasExchangeSummary", "LeafTraitsSummary".</p> <p>"FMIradiation1hrData.xlsx" and "FMIradiation10minData.xlsx" Downloaded FMI irradiance data for the period of the experiment from Kumpula Meteorological Station (at 1hr and at 10 min interval), organised and arranged in spreadsheets: FMIradiation....xlsx files</p> <p>"Statistical Tables.docx" are summaries of the statistical tables calculated from the experimental data.</p> <p>"Statistics.zip" contains individual excel files showing the statistical analyses, least squared means, and pairwise comparisons for each analysed trait, plus the statistical code used to run these analyses. One file put trait- these files are summarised in "Statistical Tables.docx"</p> <p>"Plasticity Index.docx" show the results of calculated plasticity index for each of the traits measured, and details of how this calculation was performed.</p>
Supplementary data for Inter-provenance variability and phenotypic plasticity of wood and leaf traits related to hydraulic safety and efficiency in seven European beech (Fagus sylvatica L.) provenances differing in yield
<p>Dataset and supplementary file for <strong>Inter-provenance variability and phenotypic plasticity of wood and leaf traits related to hydraulic safety and efficiency in seven European beech (<em>Fagus sylvatica</em> L.) provenances differing in yield </strong>paper.</p> <p>The ANFS_data file includes individual level measurements of xylem safety and efficiency traits, leaf traits and growth among 7 provenances planted at two common garden sites in Germany and Slovakia. More details related to the methodology might be found in the published paper by Kurjak et al. 2024.</p> <p>The ANFS_supplementary file includes the test for differences in distance to tip between sites and provenances, based on the branch diameter-branch length scaling.</p>
Mineral nitrogen nutrition of Fagus sylvatica L roots colonized by ectomycorrhizal fungi in native forest soil
<p>The aim of this study was to examine the transcription-level response of a symbiotic system comformed by the host tree <em>Fagus sylvatica</em> L (European beech) and the root-associated mycobiota to fluctuations in ammonium and nitrate availability in the soil. The experiment was conducted with young trees grown at a natural regeneration forest. We used <sup>15</sup>N stable isotopes in combination with DNA-based and RNA-based molecular methods and Illumina sequencing.</p> <p>We report data on the beech root-associated fungal community structure obtained by metabarcoding of the fungal ITS2 region, transcriptome data from the fungal community associated to the tree roots, and transcriptome data from <em>Fagus sylvatica</em> L in response to ammonium or nitrate application to the soil. We also report data from soil ammonium-N, soil-nitrate-N, tree and soil dry mass, root 15N, root N, root C, root carbohydrates, root ammonium-N, root nitrate-N, soil pH, and climate data from the experiment.</p>
Data from: Mast seeding in European beech (Fagus sylvatica L.) is associated with reduced fungal sporocarp production and community diversity
<p>A time series of seed production data from European beech (<em>Fagus sylvatica</em>) was combined with a fungal census (1977 to 2006) from La Chanéaz Fungus Reserve to evaluate the relationship between mast seeding and fungal resource availability. Annual fungal species' counts, traits, contemporaneous weather and seed production data are available here, alongside the code used to complete the analyses.</p>
Data from: Mast seeding in European beech (Fagus sylvatica L.) is associated with reduced fungal sporocarp production and community diversity
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Mineral nitrogen nutrition of Fagus sylvatica L roots colonized by ectomycorrhizal fungi in native forest soil
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Data from: Gene flow at the leading range edge - the long-term consequences of isolation in European Beech (Fagus sylvatica L. Kuhn)
Aim: Isolation is expected to lead to negative impacts on populations due to a reduction in effective population size and gene flow, exacerbating the effects of genetic drift, which might be stronger in peripheral and fragmented populations. Fagus sylvatica (European beech) in southern Sweden presents a gradient of isolation towards the leading range edge of the species. We sought to determine the impact of long-term isolation on genetic diversity and population genetic structure within populations of this species. Location: Samples were obtained from 14 sites towards the northern edge of the native range of beech in Sweden. Taxon: Fagaceae Methods: Using historical sources, we obtained area- and distance-based measures of isolation. We measured genetic diversity and structure by using nuclear microsatellite marker data, and performed parentage analysis to estimate external pollen-mediated gene flow. We implemented a partial least squares regression to determine the effects of isolation on each of the genetic diversity estimators and the measures of external pollen-mediated gene flow. Results: Long-term isolation generally had a negative impact on genetic diversity, which is exacerbated over time, further affecting progeny and suggesting that isolated populations are subject to strong genetic drift, possibly due to the combination of founder events and persistent small population sizes. Bayesian cluster analysis revealed that isolation was also acting as a barrier to gene flow in the north-eastern distribution of beech. Main conclusions: Isolation at the leading range edge of beech in Sweden has created gradients of contemporary gene flow within the species. The long-term cumulative effects of isolation on this wind-pollinated tree species and its negative impacts on genetic diversity and gene flow, could lead to inbreeding depression and higher extinction risk where populations remain small and isolated.
Data from: EuMIXFOR empirical forest mensuration and ring width data from pure and mixed stands of Scots pine (Pinus sylvestris L.) and European beech (Fagus sylvatica L.) through Europe
This data set provides unique empirical data from triplets of Scots pine (Pinus sylvestris L.) and European beech (Fagus sylvatica L.) across Europe. Dendrometric variables are provided for 32 triplets, 96 plots, 7555 trees and 4695 core samples. These data contribute to our understanding of mixed stand dynamics.
Management alters drought-induced mortality patterns in European beech (Fagus sylvatica L.) forests
<ul> <li>The high tree mortality during the dry and hot years 2018-2019 in Europe affected not only even-aged and monospecific conifer stands but also semi-natural <i>Fagus sylvatica</i> L. (European beech) forests. This has triggered concerns on the future of European beech forests under climate change and raised questions as to whether forest management may increase tree mortality rates through creating more open canopies. We compared long-term mortality rates of beech between strict forest reserves and adjacent managed reference stands for three inventory periods at 11 sites in the federal state Hesse, Germany, near the centre of the European distribution of the species.</li> <li>We hypothesized that mortality would increase with climatic water deficits during the growing season, initial stand density, and decreasing dominance (canopy status) of trees. We also hypothesized that mortality would decrease with site moisture status and the intensity of tree removals. To quantify the influence of management, initial stand density and tree removals were used as predictor variables. In addition, we analyzed the influence of the climatic water balance and competitive status of trees on mortality.</li> <li>Mean annual natural mortality rates ranged between 0.5 % and 2.1 %. Even in the drought years beech mortality rates were surprisingly low. We observed no signs of striking canopy disintegration. The significantly higher mortality (1.6 % - 2.1 %) in unmanaged stands during the drought years 2018 and 2019 was largely confined to suppressed trees. There was no significant increase of mortality in managed stands during the drought years, but a shift of mortality towards larger canopy trees.</li> <li>Our study did not confirm a general influence of management in the form of tree removals on mortality rates. Yet, we showed that during drought years management changed the distribution of mortality within the tree community. To analyze the effect of management on mortality rates more comprehensively, a wider gradient in site moisture conditions including sites drier than in this study and longer post-drought periods should be employed.</li> </ul>
Supplementary material 3 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Common OTU lists and Statistical analysis : Explanation note: This file contains detected OTUs in both methods and biodiversity analysis (GLM and t-test)
Supplementary material 2 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Biodiversity workflow in R : Explanation note: Bundle of files for biodiversity analysis in R. All necessary input files and a commented script of R-commands are provided.
Supplementary material 4 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Master data sheet : Explanation note: Spreadsheet file containing information about read abundances of operational taxonomic units (OTUs) and sample metadata. Here, data were prepared for subsequent biodiversity analysis in R.
Supplementary material 1 from: Siddique AB, Khokon AM, Unterseher M (2017) What do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat conditions. MycoKeys 20: 1-16. https://doi.org/10.3897/mycokeys.20.11265
Bioinformatics pipeline : Explanation note: This file provides all steps and commands necessary for quality filtering and demultiplexing of raw paired fastq sequences.
Data from: Assessment of spatial discordance of primary and effective seed dispersal of European beech (Fagus sylvatica L.) by ecological and genetic methods
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Data from: Comparison of pollen gene flow among four European beech (Fagus sylvatica L.) populations characterized by different management regimes
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