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233 results for “Forest canopy”

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edi60/100

Tree Canopy Leaf Area Index in CRUI Land Use Project at Harvard Forest 1997

Numerous variables related to land use disturbance and recovery processes can influence forest composition and structure. We’ve measured differences in forest communities in six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill. None of the sites had noticeable canopy gap disturbance at the time of the measurements. Leaf area index (LAI) was measured with an LAI-2000 plant canopy analyzer (Li-Cor, Inc., Lincoln, NE) at all 77 edge and interior intersection points in the 30 m x 50 m permanent plot (7 columns x 11 rows) in 5 of our 6 land use sites. Under-canopy measurements were made in each site over 25-30 minutes during midday hours (11:00-2:30 EST) on overcast days near solstice (June 13, 18). The under-canopy readings were contrasted with an open-sky measurement taken in an open field near the Harvard Forest headquarters just before beginning data collection in each site. LAI averaged 3.98 and ranged from 2.28 to 5.93 across all sites. W1 had the highest site-level mean (4.62) and maximum (5.93) LAI while S2 had the lowest values (mean = 3.41, max = 4.55). The woodlot also showed the greatest spatial variation as measured by C.V., while plow #1 showed the least variation.

openCC0Dec 2023View details →
edi60/100

Canopy Sky Factors in CRUI Land Use Project at Harvard Forest 1998

Hemispherical photos were taken at 35 interior grid corners in each land use site’s 30 m x 50 m permanent plot on uniformly overcast days during summer 1998. A Canon A-1 35 mm camera with a 7.5 mm lens was mounted on a tripod, positioned so the film plane was 0.5 m above ground, oriented N-S with a compass, and leveled. Ektachrome 100 slide film was used. Two exposures were made for each location. The slides were processed and digitized in jpeg format by Kodak, Inc. at a resolution of 1536 x 1024 dpi. The jpeg images were screened for nearground obstructions. Fifteen of the 35 photo locations per site were used in subsequent analysis. Hemiview software (v. 2.0, Delta-T Devices Ltd., Cambridge, UK) was used to process the images and calculate indirect, direct, and global (= indirect + direct) sky factors for each sample location, plus the proportion of global sky factor represented by direct beam radiation. Several images spanning a wide range of canopy density were used to develop protocols for setting optimal thresholds in converting from color to black and white images. Each B/W image was then analyzed at three threshold levels, the optimum level plus 5 threshold units (~ 2.5%) above and below the optimum. The results were averaged across the three threshold levels to provide one set of sky factor data per sample location. Above-canopy incident radiation was calculated daily for the June-September growing season based on (1) latitude and longitude, (2) average atmospheric transmission, and (3) monthly averages for fractions of the day in diffuse radiation due to cloud cover for the Harvard Forest area. Data for 2 and 3 above were provided by researchers at the State University of New York at Albany. Below-canopy radiation was estimated daily across half-hour intervals as the sum of diffuse and direct beam components. Sky factors were then calculated from the above- and below-canopy radiation values and averaged both monthly and across the growing season.

openCC0Dec 2023View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest EMS Tower since 2008

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (http://phenocam.sr.unh.edu) for more information and additional images.

openCC0Dec 2023View details →
edi60/100

Continuous Measurement of Canopy Fluorescence at Harvard Forest 2013-2014

Vegetation fluorescence, a very small amount of radiation emitted as a byproduct of photosynthesis, is a direct indicator of plant physiology. Monitoring the solar-induced plant fluorescence provides a powerful tool to understand how the plant photosynthesis responds to environmental factors such as solar radiation, temperature and precipitation as well as to stress and disturbance. We installed the ground-based fluorescence observation system to explore the Franhofer lines in the solar spectrum to monitor the canopy fluorescence. Fluorescence data could also be used to link with eddy covariance data in flux towers, the digital camera data and solar radiation data, providing a good supplementary to numerous data collected at Harvard Forest.

openCC0Dec 2023View details →
edi60/100

Canopy-Atmosphere Exchange of Carbon, Water and Energy at Harvard Forest EMS Tower since 1991

The tower-based CO2 measurements and key meteorological drivers are intended to examine how regional and ecosystem level processes in a mid-latitude forest contribute to global carbon cycling. Specifically, we endeavor to understand quantitatively how and why forested ecosystems take up or release carbon, on time scales from hours to decades, and to elucidate responses to climate changes and management interventions. The tower was installed 1989 and the resulting eddy-flux measurements constitute the longest running record of the net-ecosystem carbon exchange in a North American Forest. The resulting long-term record of Net Ecosystem Exchange (NEE) has shown the effects of climate anomalies on carbon fluxes for seasonal and annual time scales. For example, reduced soil frost allows greater respiration in the winter leading to lower C sequestration. Cumulative gross photosynthesis depends on when the canopy emerges in the spring. Warmer springtime temperatures lead to greater uptake of C. As the NEE record is extended and augmented by supporting ecological measurements, we can further identify longer-term effects of climate perturbations on carbon fluxes and further define the relationship between stand history and carbon sequestration. Climatic anomalies in one season or year may have a longer-term effect on the sequestration of carbon in subsequent seasons or years. The flux and ecological measurements are coordinated with studies at other sites through the AmeriFlux network. By examining the relationships between carbon fluxes and the driving physical and biological variables across a range of sites we are enhancing understanding of the processes that control NEE.

openCC0Mar 2024View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest LPH Tower 2010-2021

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (https://phenocam.nau.edu/webcam/) for more information and additional images.

openCC0Dec 2023View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest Barn Tower since 2011

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (https://phenocam.nau.edu/webcam/) for more information and additional images.

openCC0Dec 2023View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest Farm since 2015

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (https://phenocam.nau.edu/webcam/) for more information and additional images.

openCC0Dec 2023View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest Hemlock Tower since 2010

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (https://phenocam.nau.edu/webcam/) for more information and additional images.

openCC0Dec 2023View details →
edi60/100

PhenoCam Images and Canopy Phenology at the Harvard Forest Witness Tree since 2014

The PhenoCam Network uses imagery from digital cameras to track vegetation phenology and seasonal changes in vegetation activity in diverse ecosystems across North America and around the world. Imagery is uploaded to the PhenoCam server at the University of New Hampshire, where it is made publicly available in near-real time, every 30 minutes from sunrise to sunset, 365 days a year. The data are processed using simple image analysis tools to yield a measure of canopy greenness, from which phenological metrics are extracted, characterizing the start and end of the growing season. These transition dates have been shown to align well with on-the-ground observations of tree phenology at Harvard Forest (HF003). Long-term PhenoCam data can be used to track the impact of climate variability and change on the rhythm of the seasons. This dataset contains one mid-day image for each camera. Please see the PhenoCam Network website (https://phenocam.nau.edu/webcam/) for more information and additional images.

openCC0Dec 2023View details →
edi56/100

Canopy LiDAR Measurements in Hemlock Removal Experiment at Harvard Forest 2005

As the ecological functioning of a forest stand is often related to the spatial organization of the canopy, we used a portable canopy LiDAR (PCL; Parker et al. 2004) to measure volumetric canopy structure in the simulated HWA management treatments. In September and October 2005, prior to leaf abscission, we set up 16 parallel transects spaced 2 meters apart in the 900 m2 (30 x 30 m) interior of each of the eight treatment plots. The orientation of the transects were either north-south or east-west to minimize the difficulty of traversing the stand. The distances to canopy surfaces more than1 m above the ground along the transects were recorded with the PCL. Assuming a constant horizontal sampling rate, the continual height measures were binned into 1 m intervals. From these measures, vertical canopy profiles, canopy openness, canopy rugosity, and other metrics related to the three-dimensional structure of the canopy can be derived. These canopy measures will be repeated minimally at 5 and 15 year intervals to develop an understanding of early structural dynamics and micrometeorological consequences associated with the simulated HWA treatments. (Parker, G.G., D.J. Harding, and M.L. Berger. 2004. A portable LIDAR system for rapid determination of forest canopy structure. Journal of Applied Ecology 41, 755-767).

openCC0Dec 2023View details →
edi56/100

Canopy Phenology, Remote Sensing and Microclimate at Harvard Forest 2006-2011

Our research at the Harvard Forest walk-up tower site examines how seasonality of canopy leaf area, or canopy phenology, influences, and is influenced by, local climate. As part of this activity we are studying methods for (and limits to) remote sensing of canopy phenology. To address this research topic, we have initiated measurements to quantify how radiation fluxes through a deciduous forest canopy are modified by seasonal canopy leaf dynamics. We continuously measure above- and below-canopy radiation fluxes at a variety of spectral bands (shortwave, photosynthetic) and with digital photography. These measurements provide a surrogate measures of canopy leaf area dynamics, and directly represent the radiation component of the surface energy balance. These measurements complement ongoing microclimate and eddy covariance measurements of water and carbon exchange at the EMS flux tower.

openCC0Dec 2023View details →
edi56/100

Canopy Photosynthesis Study at Harvard Forest 1991-1992

Tree photosynthesis measurements were made from two canopy access towers on the Prospect Hill Tract, Harvard Forest, Petersham, Massachusetts between July 1991 and October 1992. Four species were observed: Oak - red oak (Quercus rubra); RM - red maple (Acer rubrum); WB - white birch (Betula papyrifera); YB- yellow birch (Betula alleghaniensis).

openCC0Dec 2023View details →
edi56/100

Canopy Chemistry Study at Harvard Forest 1992

As part of NASA's Accelerated Canopy Chemistry Program (ACCP) analyses were performed for the determination of carbon constituents and nitrogen content in fresh forest foliage. Samples were analyzed using a series of extraction's that yielded different carbon constituents: non-polar, polar, cellulose and lignin. Nitrogen analyses were conducted using a standard combustion procedure. Approximately 1000 leaf samples were collected from 5 geographically distinct sites and were analyzed at the University of New Hampshire to ensure consistency in analysis. Results were used as a calibration set for Visible/NIR reflectance and the estimation of carbon and nitrogen concentrations at both the leaf and canopy level. The canopy level study uses high spectral resolution data from NASA's Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) to estimate canopy level nitrogen and lignin concentration for the Harvard Forest and other study areas. The current link to this data from the Harvard Forest LTER site is to an archive at the University of New Hampshire. Additional information on this study, including, leaf level spectra and remote sensing data are available from a NASA DAAC site (http://www-eosdis.ornl.gov/daacpages/accp.html). Additional foliar chemistry data is also available on a searchable on-line database at http://www.folchem.sr.unh.edu.

openCC0Dec 2023View details →
edi56/100

Urban forest canopy cover, vegetation, and site characteristics, Twin Cities Metro Area, 2022 and 2023.

This data was primarily collected to assess forest quality within the Minneapolis-St. Paul (MSP) Metropolitan Area and to link above-ground and below-ground properties as part of the goals of the MSP-LTER Urban Tree Canopy research group. Here, we sampled vegetation on 48 circular plots with a 12.5 m radius distributed across 18 parks, registering the date of sampling, park and management agency names, the plot number, and geolocation (latitude, longitude, and elevation). The plots were randomly selected based on GEDI (Global Ecosystem Dynamics Investigation instrument) 2021 footprints in the MSP Metropolitan Area along accessible forested areas inside public parks, where the management agency allowed sampling. In each plot, we measured forest structure and diversity metrics, species names and abundance, DBH, height, distance from the plot center, the height where each individual canopy starts, and the relative position, exposure, and density of each canopy. We also measured understory plant structure and diversity in 4 subplots per plot, totaling 192 subplots. In these subplots, we surveyed all individual plants with heights over 20 cm, recording species names and abundance, plant basal diameter, plant height, and the total number of branches. Furthermore, we assessed the canopy openness above each subplot by calculating percent DIFN (diffuse non-interceptance) from fish eye pictures of the canopy at 1.3 meters over the subplot.

openCC (other)Feb 2025View details →
edi52/100

Hubbard Brook Experimental Forest: Hourly Temperature Under Canopy by HOBO sensors at Valleywide Plots, 2013-2020

Air temperature at 1.5 m agl is measured at hourly intervals under the canopy at every fifth valleywide plot plus one more between watersheds 1 and 4. The sensors are maintained by bird crews and volunteers. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the US Forest Service, Northern Research Station.

openCC (other)May 2025View details →
edi52/100

Hubbard Brook Experimental Forest: Relations of the O-horizon with canopy tree species and hydropedologic soil types, 2021

As the interface between plants and soil, the organic horizon is the foundation of forest ecosystems. Two potential predictors of O-layer properties, vegetation and mineral soil type, are difficult to separate because they typically covary. We conducted a factorial study involving four canopy tree species and two soil types with distinctly different hydrology and topographic position to parse patterns in chemistry and microbiota of the O-layer in a north-temperate deciduous forest. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.

openCC (other)Jan 2025View details →
edi52/100

Hubbard Brook Experimental Forest: Watershed 6 Temporal Canopy Leaf Chemistry, 1992 - ongoing

Overstory foliage is collected in late summer from a reference forest to the west of Watershed 6 (also referred to as Bear Brook Watershed). Concentrations of C, N, P, K, Ca, Mn, Mg, and the natural abundance of N and C isotopes (delta-15N and delta-13C) in foliage are measured. These measurements, in combination with litterfall estimates of foliar biomass, allow us to estimate the pool of nutrients in foliage. They also allow us to estimate nutrient retranslocation, using measurements of leaf litterfall chemistry. Long-term measurements continue with the aim of detecting disturbances in nutrient cycling and trends in foliar chemistry over long time scales. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.

openCC (other)Aug 2025View details →
zenodo48/100

Data from paper: "Large-scale variations in the dynamics of Amazon forest canopy gaps from airborne lidar data and opportunities for tree mortality estimates"

<p>Data from the paper:</p> <p>Dalagnol, R.&nbsp;<em>et al.</em>&nbsp;Large-scale variations in the dynamics of Amazon forest canopy gaps from airborne lidar data and opportunities for tree mortality estimates.&nbsp;<em>Sci Rep</em>&nbsp;<strong>11,&nbsp;</strong>1388 (2021). https://doi.org/10.1038/s41598-020-80809-w</p> <p>Link:&nbsp;https://www.nature.com/articles/s41598-020-80809-w</p> <p>&nbsp;</p> <p>This repository contains:</p> <p>1) Data frame with data from static and dynamic gaps used in Figure 2&nbsp;(Dalagnol_2020_Data_Multitemporal_gaps.csv). Each row is the aggregated measurement at 5-km resolution. The site component referes to the five site studied with multitemporal data. Site order from 1 to 5 is DUC, TAP, FN1, BON and TAL.</p> <p>2) Data frame with data from static gaps and environmental factors used in Table 1, Figure 3, 4, 5 (Dalagnol_2020_Data_Singledate_gaps_Modeling.csv). Each row is the aggregated measurement of one site observed by airborne lidar data.</p> <p>3) Raster file at 5-km resolution with dynamic gap fraction estimates presented in Figure 5 (dynamic_gap_fraction_amazon.tif).</p> <p>&nbsp;</p> <p>If you need anything else, please contact the corresponding author: Ricardo Dalagnol (ricds@hotmail.com).</p>

opencc-by-4.0Nov 2020View details →
zenodo48/100

Data from Phenocam (PHE) measurements of above-canopy vegetation (hartheim1) at Hartheim Forest Research Site (DE-Har) from 2023-01-01 to 2023-12-31 [RAW]

<p>Phenocam images from "hartheim1" at DE-Har separated into near-infrared (NIR) and visible (VIS) for the year 2023.&nbsp;</p> <p>Phenocam "hartheim1" shows the view from the main tower at 29.6m height towards N at the <a href="https://www.meteo.uni-freiburg.de/en/infrastructure/hartheim-forest-research-site?set_language=en">ICOS Associate Ecosystem Site DE-Har, Germany</a> recording the phenology and state of the top of the canopy consisting of pinus sylverstris and pinus nigra.</p>

opencc-by-4.0Apr 2024View details →

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Allen Brain Atlas

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allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record