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5 results for “Fragaria x ananassa”
Fig. 4 in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
Fig. 4. Presence of known haem-dependent and manganese-dependent catalase encoding genes in five reference genomes of the genus Latilactobacillus and AMBP162T. Analysis was done by comparing the four known catalase genes from lactic acid bacteria against all predicted proteins from the six Latilactobacillus genomes using BLASTp.
Fig. 2 in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
Fig. 2. Core genome phylogenetic tree of the genus Latilactobacillus. Genes were predicted with Prodigal version 2.6.3 [33] and core genes were determined, aligned and concatenated with SCARAP version 7cd24ba [16]. 662 strict core genes were found. Columns with one or more gaps were trimmed from the alignment with trimAl version 1.4.rev15 [34]. A maximum-likelihood phylogeny was inferred with IQ-Tree version 1.6.11 [31], using the LG+F+I+G4 amino acid substitution model. Bootstrap support was determined with the SH-aLRT test with 1000 replicates and the UFboot test with 1000 replicates. Branches with an SH-aLRT support of at least 80% and UFboot support of at least 95% were considered reliable and were indicated with a dark blue dot. The tree was visualized with ggtree version 3.0.2 [32].
Fig. 3 in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
Fig. 3. Light microscope image at ×1000 magnification of Gram-stained cells of AMBP162T grown for 24 h at 30 °C in de Man–Rogosa–Sharpe broth, shaking at 200 r.p.m.
Construction of a subtracted gDNA microarray for rapid discovery of molecular markers associated with day-neutrality in strawberry (Fragaria x ananassa)
GEO Series GSE70145. Fragaria x ananassa. 4 samples. Type: Genome variation profiling by array.
Fig. 1. 16S in Latilactobacillus fragifolii sp. nov., isolated from leaves of a strawberry plant (Fragaria x ananassa)
Fig. 1. 16S rRNA tree of the genus Latilactobacillus Reference genomes for five species of Latilactobacillus and the outgroup species Paralactobacillus selangorensis were determined from the Genome Taxonomy Database release 89 [18] and downloaded from the NCBI. The in-house-sequenced genome of strain AMBP162T was added. 16S rRNA sequences were extracted from whole genome sequences using Barrnap version 0.9 [29] and aligned with MAFFT version 7.407 [30]. A maximum-likelihood phylogeny was inferred with IQ-Tree version 1.6.12 [31], using a TN+F+I nucleotide substitution model. The tree was visualized with ggtree version 3.0.2 [32].
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.