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ShareScore release 0.9.0
Dataset results
56 results for “Fusobacterium nucleatum”
Data from: Fusobacterium nucleatum and Bacteroides fragilis detection in colorectal tumours: optimal target site and correlation with total bacterial load
<p>These data were generated to investigate detection of <em>Fusobacterium nucleatum </em>(<em>F. nucleatum</em>) and <em>Bacteroides fragilis</em> (<em>B. fragili</em>s) across different regions of human colorectal tumours. Relative abundance of each species in DNA extracted for clinical molecular mutation testing from formalin-fixed, paraffin-embedded (FFPE) tumour samples from 42 patients was assessed using targeted real-time PCR quantitative (qPCR) (the screening cohort). DNA was then freshly extracted from specific regions of tumours testing positive for one or both species (n = 20) and from 31 additional patients, and relative abundance of each species assessed using qPCR (site investigation cohort). Total bacterial load at the tumour luminal surface (where <em>F. nucleatum</em> and <em>B. fragilis</em> were most frequently detected) was also assessed by qPCR using primers targeting amplification of 16S rRNA. 16S sequencing was performed on tumour luminal surface DNA samples from five patients as an orthogonal method to confirm the ability to detect the targeted species by qPCR.</p>
Fusobacterium Nucleatum at Colorectal Cancer Sites
ClinicalTrials.gov study NCT05945082. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Data from: Fusobacterium nucleatum and Bacteroides fragilis detection in colorectal tumours: optimal target site and correlation with total bacterial load
Open the record for dataset details and reuse information.
Effect of Fusobacterium nucleatum (Fn) infection or Fn-Dps treatment on gene expression of esophageal carcinoma Kyse150 and Kyse30 cells
GEO Series GSE222917. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Gastric cancer cells treated with exosomes derived from Fusobacterium nucleatum infected MKN-28 cells [miRNA-seq]
GEO Series GSE213833. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Inhibitory effects of Fusobacterium nucleatum on osteogenic differentiation of osteoblasts and its molecular mechanism
GEO Series GSE133223. Rattus norvegicus. 36 samples. Type: Expression profiling by high throughput sequencing.
Fusobacterium nucleatum promotes colorectal cancer metastasis through miR-1322/CCL20 axis and M2 polarization
GEO Series GSE173549. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
The Fusobacterium Nucleatum (Fn) in colorectal carcinogenesis
GEO Series GSE141805. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of Fusobacterium nucleatum-stimulated Human gingival fibroblasts
GEO Series GSE118691. Homo sapiens. 54 samples. Type: Expression profiling by high throughput sequencing.
Fusobacterium nucleatum Reducing METTL3-mediated m6A Modification Contributes to Colorectal Cancer Aggressiveness [RNA-Seq]
GEO Series GSE150309. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Gastric cancer cells treated with exosomes derived from Fusobacterium nucleatum infected MKN-28 cells [RNA-seq]
GEO Series GSE214817. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome analysis reveals that Fusobacterium nucleatum promotes the expression of JAK3 in laryngeal cancer
GEO Series GSE236117. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Fusobacterium nucleatum Reducing METTL3-mediated m6A Modification Contributes to Colorectal Cancer Aggressiveness
GEO Series GSE150310. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Intratumoral Fusobacterium nucleatum Recruits Tumor-Associated Neutrophils to Promote Gastric Cancer Progression and Immune Evasion
GEO Series GSE264532. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
An antisense oligomer conjugate with unpredicted bactericidal activity against Fusobacterium nucleatum
GEO Series GSE284320. Fusobacterium nucleatum. 36 samples. Type: Expression profiling by high throughput sequencing.
Fusobacterium nucleatum Promotes Metastasis of Breast Cancer via the miR-21-3p/FOXO3 Axis
GEO Series GSE298584. Homo sapiens. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Fusobacterium nucleatum promotes colorectal carcinogenesis via an m6A dependent pathway
GEO Series GSE191257. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Fusobacterium nucleatum Reducing METTL3-mediated m6A Modification Contributes to Colorectal Cancer Aggressiveness [RIP-Seq]
GEO Series GSE150308. Homo sapiens. 8 samples. Type: Methylation profiling by high throughput sequencing.
Fusobacterium nucleatum promotes colorectal cancer cells adhesion to endothelial cells and facilitates extravasation and metastasis by inducing ALPK1/NF-κB/ICAM1 axis
GEO Series GSE171611. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Influence of dual-species coaggregation on transcriptional changes of Streptococcus gordonii and Fusobacterium nucleatum subsp. polymorphum
GEO Series GSE164282. Streptococcus gordonii str. Challis substr. CH1; Fusobacterium polymorphum. 9 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.