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45 results for “Gammaproteobacteria”
Gammaproteobacteria protein dataset
<p>This dataset contains faa and gff files originating from RefSeq Gammaproteobacteria complete sequence database available on 2020 Jul 10. Files ending with .phr, .pin, and .psq are blast database.</p> <p> </p>
Fig. 5 in Report of 39 unrecorded bacterial species in Korea belonging to Gammaproteobacteria
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Pseudomonadales in the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms, while open circles indicate that the corresponding nodes were also recovered in the tree generated with one of these algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Report of 39 unrecorded bacterial species in Korea belonging to Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Aeromonadales and Alteromonadales in the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms, while open circles indicate that the corresponding nodes were also recovered in the tree generated with one of these algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in Report of 39 unrecorded bacterial species in Korea belonging to Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Arenicellales, Vibrionales and Xanthomonadales in the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms, while open circles indicate that the corresponding nodes were also recovered in the tree generated with one of these algorithms. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in Report of 39 unrecorded bacterial species in Korea belonging to Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in the study. Strains: 1, 4003; 2, 4231; 3, 7026; 4, 7034; 5, 9023; 6, BE6-1; 7, CAU 1046; 8, CAU 1335; 9, DS041; 10, EC2D12; 11, GM22; 12, Gsoil 3009; 13, HMF7415; 14, HMF8002; 15, HMF8004; 16, HMF8044; 17, IMCC25635; 18, IMCC25639; 19, IMCC25642; 20, IMCC25643; 21, IMCC25647; 22, IMCC25652; 23, KB012; 24, LGGG06; 25, LPB0132; 26, LPB0153; 27, LPB0156; 28, LPB0159; 29, POB9; 30, SFD22; 31, SN5; 32, SN10; 33, UL158; 34, UL222; 35, UL498-1; 36, UL506; 37, YC7-24; 38, YHY1; 39, ZOD21.
Fig. 1 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021
Fig. 1. Transmission electron micrographs of cells of the strains belonging to the Betaproteobacteria and Gammaproteobacteria. The strains were cultured at their optimal growth conditions. Strain: 1, HMG1432; 2, HMG1944; 3, HMG2081; 4, HMG5310; 5, SATFR7; 6, ATS74; 7, PS9; 8, 18JY64; 9, BT33; 10, MMS21YDR2; 11, CAU 1658; 12, 16_SB_L4; 13, G12; 14, CAU 1657; 15, 15G113; 16, CAU 1650; 17, MMS21M35; 18, CAU 1655; 19, 17_H6_M9; 20, GJ5111; 21, G510; 22, CAU 1666; 23, SATFR3; 24, AMTFM1; 25, AMTFM15; 26, AMTFR2; 27, DSTFM2; 28, BT758; 29, JHKTFM108; 30, DSTFM15.
Fig. 3 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021
Fig. 3. Neighborjoining (NJ) phylogenetic tree based on 16S rRNA gene sequences, showing the relationships between the strains identified in this study and their relatives of the orders Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, Lysobacterales, Moraxellales, Oceanospirillales, Pseudomonadales, and Vibrionales in the class Gammaproteobacteria. Black dots indicate that the corresponding nodes were also recovered in the trees generated using the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values (>70%) based on 1,000 replications are indicated at branch points (NJ/ML/MP). The scale bar represents a 0.02 nucleotide sequence divergence.
Fig. 2 in A report on 30 unrecorded bacteria species in Korea belonging to the classes Betaproteobacteria and Gammaproteobacteria in 2021
Fig. 2. Neighborjoining (NJ) phylogenetic tree based on 16S rRNA gene sequences, showing the relationships between the strains identified in this study and their relatives of the order Burkholderiales in the class Betaproteobacteira. Black dots indicate that the corresponding nodes were also recovered in the trees generated using the maximum likelihood (ML) and maximum parsimony (MP) algorithms. Bootstrap values (>70%) based on 1,000 replications are indicated at branch points (NJ/ML/MP). The scale bar represents a 0.02 nucleotide sequence divergence.
Fig. 3 in A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Enterobacteriales in the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms, while open circles indicate that the corresponding nodes were also recovered in the tree generated with one of these algorithms. Bar, 0.01 substitutions per nucleotide position.
Fig. 2 in A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the order Pseudomonadales in the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms, while open circles indicate that the corresponding nodes were also recovered in the tree generated with one of these algorithms. Bar, 0.01 substitutions per nucleotide position.
Fig. 4 in A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the class Gammaproteobacteria. Bootstrap values (>50%) are shown at branching points. Filled circles indicate that the corresponding nodes were also recovered in the trees generated with the maximum-likelihood and maximum-parsimony algorithms. Bar, 0.01 substitutions per nucleotide position.
Fig. 1 in A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1, DT1-03; 2, DT1-04; 3, DT1-05; 4, DT5-05; 5, ST6-03; 6, DR3-01; 7, SR3-03; 8, SR4-03; 9, SR6-02; 10, Gsoil 852; 11, MBM1; 12, MDY2F18; 13, MBB2-1; 14, JJ9010; 15, IMCC1859; 16, IMCC20105; 17, IMCC20160; 18, IMCC20164; 19, IMCC20180; 20, MWS24; 21, NMWL17; 22, SD19; 23, B-12; 24, SJ3-2; 25, JW17; 26, HME9287; 27, HME9331; 28, HME9414; 29, HME9429; 30, WS85; 31, WW126.
Fig. 5 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria
Fig. 5. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Gammaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 4 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Pseudomonadales in the class Gammaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 3 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the order Alteromonadales in the class Gammaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria
Fig. 1. Transmission electron micrographs or scanning electron micrographs of cells of the strains isolated in this study. Strains: 1. VNT1; 2. RMH2-4; 3. mNT30; 4. HME8439; 5. HME8586; 6. J6; 7. HD47; 8. J4; 9. J7; 10. KYW799; 11. WS-MG1; 12. ES05-9M-7-MA; 13. KA23; 14. HME8844; 15. IMCC1088; 16. WR-R8Y; 17. MA16; 18. SB11; 19. WR-M4W; 20. MUG3-2; 21. CR2-4; 22. CRS5-1; 23. HWDM10; 24. WS-MW4; 25. WS-MW1; 26. CT3-6; 27. HME8588; 28. CR6-3; 29. HY_N_1_1; 30. LE_C_1_2; 31. ES05-27M-7; 32. J19; 33. HME8508; 34. M8; 35. PM3; 36. KYW889; 37. CT5-2; 38. Gsoil549; 39. WSW-MW5.
Fig. 2 in A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationship between the strains isolated in this study and their relatives of the class Betaproteobacteria. Bootstrap values (>70%) are shown above nodes for the neighbor-joining and below nodes for the maximum-likelihood methods. Filled circles indicate the nodes recovered by the two treeing methods. Bar, 0.02 substitutions per nucleotide position.
Fig. 4 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Pseudomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 3 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 3. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Enterobacteriales, Oceanospirillales and Xanthomonadales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
Fig. 2 in A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
Fig. 2. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationship between the strains isolated in this study and their relatives of the order Aeromonadales, Alteromonadales and Chromatiales in the class Gammaproteobacteria. Sphingopyxis macrogoltabida IFO 15033T (D13723) was used as an outgroup. Bootstrap values (>70%) are shown above nodes for the neighbor-joining. Scale bar: 0.02 changes per nucleotide.
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