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ShareScore release 0.9.0
Dataset results
3 results for “Genomic Data Sciences”
Data and code from: Integrating genomics, collections, and community science to delimit species clarifies the taxonomy of a variable monitor lizard (<em>Varanus tristis</em>)
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Code and Data for "Genome-wide repeat landscapes in cancer and cell-free DNA" (Annapragada et.al., Science Translational Medicine, 2024)
<h1><strong>Code and Data for "Genome-wide repeat landscapes in cancer and cell-free DNA"</strong></h1> <div> <div> <p>Citation: <br>Annapragada, A.V. Niknafs, N. White, J.R. Bruhm, D.C., Cherry, C., Medina, J.E., Adleff, V., Hruban C., Mathios, D., Foda, Z.H., Phallen, J., Scharpf, R.B., Velculescu, V.E. Genome-wide repeat landscapes in cancer and cell-free DNA. <em>Science Translational Medicine</em>. 2024.</p> <p><a>The code to run the ARTEMIS pipeline and reproduce manuscript figures is publicly available at </a><a href="https://github.com/cancer-genomics/artemis2024">https://github.com/cancer-genomics/artemis2024</a></p> <p>This code also depends on c<a>ode that generates DELFI features for fragmentation-based analysis, which may be found at </a><a href="https://github.com/cancer-genomics/reproduce_lucas_wflow">https://github.com/cancer-genomics/reproduce_lucas_wflow</a> </p> <p>These github repositories have also been archived in this Zenodo as they were on 02/06/2024 (DELFI fragmentation) and 03/11/2024 (ARTEMIS).</p> </div> </div>
Extended data for Manuscript: Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis
<p>This is the extended data for the manuscript submitted to F1000 Research titled:</p> <p><strong>Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis</strong></p> <p>The data provided includes redacted attendee data from a workshop, survey responses from an anonymous survey of participants, and a figure describing the overall workshop directory flow. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.