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ShareScore release 0.9.0
Dataset results
15 results for “GeoChip”
D-Dert Experiment GeoChip Analysis Results
Patterns of biodiversity, such as the increase toward the tropics and the peaked curve during ecological succession, are fundamental phenomena for ecology. Such patterns have multiple, interacting causes, but temperature emerges as a dominant factor across organisms from microbes to trees and mammals, and across terrestrial, marine, and freshwater environments. However, there is little consensus on the underlying mechanisms, even as global temperatures increase and the need to predict their effects becomes more pressing. The purpose of this project is to generate and test theory for how temperature impacts biodiversity through its effect on biochemical processes and metabolic rate. A combination of standardized surveys in the field and controlled experiments in the field and laboratory measure diversity of three taxa -- trees, invertebrates, and microbes -- and key biogeochemical processes of decomposition in seven forests distributed along a geographic gradient of increasing temperature from cold temperate to warm tropical. D-Dert is a lab incubation experiment to test the effect of temperature on biodiversity. The original dataset was created by Michael Kaspari's lab at the University of Oklahoma in 2012 -- using soil sampled from a single site in Oklahoma and processed by the University of Oklahoma Institute for Environmental Genomics with an GeoChip 4.6 IEG Microarray data analysis pipeline as part of a macrosystems biodiversity and latitude project supported by the National Science Foundation under Cooperative Agreement DEB#1065836.
The functional diversity of stream microbes on mountainsides across Eurasia based on Geochip 4.0
GEO Series GSE128826. Fungi; biofilm metagenome; Bacteria; Archaea. 52 samples. Type: Other.
Urban waterways microbial communities (GeoChip)
GEO Series GSE64286. Bacteria; environmental samples; environmental samples; environmental samples. 17 samples. Type: Genome variation profiling by array.
Microbial community functional structures in wastewater treatment plants as characterized by GeoChip
GEO Series GSE54055. Eukaryota; Viruses; Bacteria; Archaea; activated sludge metagenome. 12 samples. Type: Other.
The distant Microbial communities in Tibetan alpine meadow based on Geochip 4.0
GEO Series GSE52425. uncultured bacterium; Bacteria. 63 samples. Type: Genome variation profiling by array.
The microbial functional structure along an elevation gradient of the Shennongjia Mountain as characterized by GeoChip
GEO Series GSE58433. Eukaryota; Viruses; uncultured soil microorganism; Bacteria; Archaea. 73 samples. Type: Other.
GeoChip data of soil microbial communities in the maize rhizosphere and bulk soils
GEO Series GSE61338. uncultured bacterium; Bacteria. 6 samples. Type: Genome variation profiling by array.
The microbial functional structure along the latitudinal gradient from the north to the south in China mainland as characterized by GeoChip
GEO Series GSE69171. Archaea; Eukaryota; Bacteria. 300 samples. Type: Other.
GeoChip data from fungal community in Alaskan tundra soil
GEO Series GSE127899. soil metagenome; Fungi. 12 samples. Type: Genome variation profiling by array.
GeoChip and environmental data of soil microbial communities of three subtropical broad-leaved forests
GEO Series GSE165723. soil metagenome. 27 samples. Type: Other.
The microbial functional diversity in response to warming incubation at Alaska as characterized by GeoChip
GEO Series GSE89644. Archaea; Bacteria; soil metagenome; Eukaryota; Viruses. 30 samples. Type: Other.
Geochip data of soil microbial community of biomes from three termperature zones
GEO Series GSE172195. uncultured soil microorganism; soil metagenome. 120 samples. Type: Other.
Microbial communities of vineyard BRO11-BRO12 soils (GeoChip)
GEO Series GSE146289. Fungi; Bacteria; Viruses; soil metagenome; Archaea. 6 samples. Type: Genome variation profiling by array.
Gene expression-based, through the hybridization of microbial DNA onto the designed probes on microarrys, i.e., GeoChip
GEO Series GSE132839. Bacteria; Eukaryota; soil metagenome; manure metagenome; Archaea; compost metagenome. 79 samples. Type: Other.
The microbial functional diversity in response to altered precipitation on Tibet Plateau as characterized by GeoChip
GEO Series GSE82006. uncultured soil microorganism. 18 samples. Type: Other.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.