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22 results for “Goodenia”
Data from: Employing hypothesis testing and data from multiple genomic compartments to resolve recalcitrant backbone nodes in Goodenia s.l. (Goodeniaceae)
Goodeniaceae is a primarily Australian flowering plant family with a complex taxonomy and evolutionary history. Previous phylogenetic analyses have successfully resolved the backbone topology of the largest clade in the family, Goodenia s.l., but have failed to clarify relationships within the species-rich and enigmatic Goodenia clade C, a prerequisite for taxonomic revision of the group. We used genome skimming to retrieve sequences for chloroplast, mitochondrial, and nuclear markers for 24 taxa representing Goodenia s.l., with a particular focus on Goodenia clade C. We performed extensive hypothesis tests to explore incongruence in clade C and evaluate statistical support for clades within this group, using datasets from all three genomic compartments. The mitochondrial dataset is comparable to the chloroplast dataset in providing resolution within Goodenia clade C, though backbone support values within this clade remain low. The hypothesis tests provided an additional, complementary means of evaluating support for clades. We propose that the major subclades of Goodenia clade C (C1–C3 + Verreauxia) are the result of a rapid radiation, and each represents a distinct lineage.
Data from: Employing hypothesis testing and data from multiple genomic compartments to resolve recalcitrant backbone nodes in Goodenia s.l. (Goodeniaceae)
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Supplementary material 1 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Summary of GenBank accession numbers, Taxon names, Project numbers, Herbarium Accession numbers, voucher collectors and collection numbers, phylogenetic position and taxonomy and classification according to Shepherd et al.
Supplementary material 8 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade A cpDNA (trnL-F, matK) alignment
Supplementary material 11 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade B nrITS alignment
Supplementary material 12 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade C cpDNA (trnL-F, matK) alignment
Supplementary material 10 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade B cpDNA (trnL-F, matK) alignment
Supplementary material 9 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade A nrITS alignment
Figure 7 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 7 Goodenia Clade B_2 phylogeny from combined nrDNA + cpDNA sequence data and exemplar taxa of major subclades. Topology is 50% majority rule cladogram from the partitioned Bayesian inference analysis. Support values above the branches are Bayesian posterior probabilities and below are maximum likelihood bootstrap values. Branch colour corresponds with support values and taxon colour corresponds to the taxonomic classification of Carolin et al. (1992). For updated taxonomy from this paper, see Tables 1, 2. Taxa represented by multiple accessions are distinguished by project code numbers as listed in Suppl. material 1. AG. leiospermaBG. heteromeraCG. heterochilaDG. muellerianaEG. macroplectraFG. glandulosaGG. odonnelliiHG. pilosaIG. armstrongiana (White form). Images: C. Nieminski (A, G–I); Seeds of South Australia (B, C, F); A. Perkins (D); K.R. Thiele (E).
Figure 1 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 1 Summary of broad relationships in Goodeniaceae from Jabaily et al. (2012) based on a 50% majority-rule cladogram from a partitioned Bayesian inference analysis of trnL-F and matK, with additional bootstrap values from separate parsimony and maximum likelihood analyses (values above branches are Bayesian posterior probabilities, values below branches are maximum likelihood bootstrap). Left inset – Coopernookia strophiolata showing the unique indusium pollen presenter (red arrow) that is diagnostic for the family. Voucher: K.R. Thiele 3710. Image: K.R. Thiele.
Figure 4 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 4 Diagramatic sections of ovaries (l.s.) modified from Carolin (1959). From left–right Velleia, Goodenia, Verreauxia, and Scaevola, showing fusion of floral parts and structure of the incomplete locules and placentation of ovules.
Supplementary material 3 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade A nrITS phylogeny
Supplementary material 4 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade B cpDNA (trnL-F, matK) phylogeny
Figure 3 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 3 Characterisation of inflorescence structure in Goodenias.l. modified from Carolin (1967a) with his corresponding Bauplan 'Type' concepts stated were applicable and phylogenetic position for exemplar species given in brackets; MI = main inflorescence, EZ = enrichment zone, V = vegetative zone. A Form A (Type 1) is a thyrse with leafy bracts and bracteoles e.g. Goodenia ovata (Goodenia I) or (Type 2) 1(–2)-flowered raceme with leafy bracts and bracteoles e.g. G. laevis (Goodenia I) (inset) B Form B (Type 5) is a basal rosette with leafy bracts and bracteoles e.g. G. hederacea (Goodenia II) C Form C (no Type) with flowers solitary in leaf axils, leafy bracts and bracteoles e.g. G. convexa (Goodenia II) D Form D (no Type) flowers solitary in leaf axils with leafy bracts, bracteoles absent e.g. G. pumilo (Porphyranthus I) E Form E (Type 4) a basal rosette, bracteoles, with leafy bracteose bracts and either a panicle-like form e.g. G. paniculata, raceme e.g. G. gracilis (Porphyranthus II) (inset above) or a thyrse e.g. G. pterigosperma (Coeruleae) (inset below) F Form F (Type 6) with ebracteolate racemes and leafy bracts e.g. G. hispida (Ebracteolatae II), (Type 7) non-leafy bracts e.g. G. cusackiana (Ebracteolatae I) (inset above), or (Type 8) a subumbel e.g. G . pulchella (Ebracteolatae I) (inset below) G Form G (Type 3) represented by a thyrse with reduced bracts and bracteoles e.g. G. scapigera (Monochila) and H Form H (Velleia Type) is a compound dichasium with leafy bracts and bracteoles e.g Velleia lyrata (Velleia).
Figure 2 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 2 Diagnostic features of various species in Goodenias.l.A the type species Goodenia ovataBScaevola collaris fan-like flowers and immature fleshy fruit CG. concinna subumbellate inflorescence DG. scapigera with short, stiff hairs on the style, narrow indusium and white fan-like flowers EVelleia cycnopotamica with free sepals attached below the ovary (white arrow) FG. vilmoriniae seed with a broad membranous wing GG. scapigera habit with cauline leaves and thyrse-like inflorescences HG. gypsicola leafy bracts (white arrow) ISelliera radicans with prostrate stems rooting at the nodes, and solitary, bracteolate, fan-like flowers in the leaf axils. Vouchers: K.A. Shepherd KS 1530 (A); K.A. Shepherd KS 1533 (B); K.A. Shepherd KS 1591 (C); K.A. Shepherd KS 1584 (D); K.R. Thiele KRT 4201 (E); DEM6887 (F); K.A. Shepherd KS 1468 (G); R. Davis s.n. (H); J.A. Cochrane & S. Barrett 4181 (I). Images: K.A. Shepherd (A–D, G); K.R. Thiele (E, I); Seeds of South Australian (F); R. Davis (H).
Supplementary material 7 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade C nrITS phylogeny
Supplementary material 5 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade B nrITS phylogeny
Figure 8 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 8 Goodenia Clade C phylogeny from combined nrDNA + cpDNA sequence data and exemplar taxa of major subclades. Topology is 50% majority rule cladogram from the partitioned Bayesian inference analysis. Support values above the branches are Bayesian posterior probabilities and below are maximum likelihood bootstrap values. Branch colour corresponds with support values and taxon colour corresponds to the taxonomic classification of Carolin et al. (1992). For updated taxonomy from this paper, see Tables 1, 2. Taxa represented by multiple accessions are distinguished by project code numbers as listed in Suppl. material 1. AG. xanthotrichaBG. coeruleaCG. hassalliiDG. quadrilocularisEVerreauxia reinwardtiiFG. helmsiiGG. sericostachyaHG. stobbsianaIVelleia paradoxaJV. roseaKV. connata. Images: A. Crawford (A); F. & J. Hort (B, E–G); K.A. Shepherd (C, D, I, J); A. Perkins (H); K.R.Thiele (K).
Figure 5 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Figure 5 Goodenia Clade A phylogeny from combined nrDNA + cpDNA sequence data and exemplar taxa of major subclades. Topology is 50% majority rule cladogram from the partitioned Bayesian inference analysis. Support values above the branches are Bayesian posterior probabilities and below are maximum likelihood bootstrap values. Branch colour corresponds with support values and taxon colour corresponds to the taxonomic classification of Carolin et al. (1992). For updated taxonomy from this paper, see Tables 1, 2. Taxa represented by multiple accessions are distinguished by project code numbers as listed in Suppl. material 1. AG. ovataBSelliera radicansCG. viscidaDG. calcarata; EG. tripartitaFG. willisianaGG. hederacea. Images: J. Tann (A, G); R. Cumming (B); K.R. Thiele (C); Seeds of South Australia (D, F); K.A. Shepherd (E).
Supplementary material 6 from: Shepherd KA, Lepschi BJ, Johnson EA, Gardner AG, Sessa EB, S. Jabaily R (2020) The concluding chapter: recircumscription of Goodenia (Goodeniaceae) to include four allied genera with an updated infrageneric classification. PhytoKeys 152: 27-104. https://doi.org/10.3897/phytokeys.152.49604
Goodenia Clade C cpDNA (trnL-F, matK) phylogeny
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