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9 results for “Halobacterium salinarum; Halobacterium salinarum NRC-1”
Supplementary Information for "Evolution upon leather manufacturing: comparison of the two Halobacterium salinarum strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1"
<p>This set of files contains Supplementary Data associated with the emerging manuscript "Evolution upon leather manufacturing: comparison of the two <em>Halobacterium salinarum</em> strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1." by Friedhelm Pfeiffer and Mike Dyall-Smith.</p> <p>The manuscript provides a detailed comparison of the complete genome sequences from four strains of <em>Halobacterium salinarum</em>:<br> 91-R6 (NRC 34002, the type strain of <em>Halobacterium salinarum</em>);<br> 63-R2 (NRC 34001, a strain originally reported as 'cutirubra');<br> NRC-1 and R1 (two laboratory strains).</p> <p>“Supplementary Methods” extends the Methods section of the manuscript, providing additional detail.</p> <p>“Supplementary Text S1” provides additional detail for the comparison of the chromosome from strain 63-R2 to those from strains NRC-1 and R1.</p> <p>“Supplementary Text S2” provides additional details for the comparison of the chromosomes from strains 63-R2 and 91-R6.</p> <p>“Supplementary Text S3” provides additional detail for the comparison of the plasmids from strain 63-R2 to those from strains NRC-1 and R1.</p> <p> </p> <p>“Supplementary Table S4” correlates positions from “core” sequences (devoid of strain-specific mobile genetic elements) to the original genome sequences.</p>
Data for "Evolution upon leather manufacturing: comparison of the two Halobacterium salinarum strains isolated in the early 20-th century with the twin laboratory strains NRC-1 and R1"
<p>This set of files contains data associated with the emerging manuscript<br> "Evolution upon leather manufacturing: comparison of the two<br> Halobacterium salinarum strains isolated in the early 20-th century<br> with the twin laboratory strains NRC-1 and R1."<br> by Friedhelm Pfeiffer and Mike Dyall-Smith.</p> <p>The manuscript provides a detailed comparison of the complete genome<br> sequences from four strains of Halobacterium salinarum:<br> 91-R6 (NRC 34002, the type strain of Halobacterium salinarum);<br> 63-R2 (NRC 34001, a strain originally reported as 'cutirubra');<br> NRC-1 and R1 (two laboratory strains).</p> <p>A detailed comparison of the complete genome sequences of three strains<br> (excluding 63-R2) has been previously reported:<br> Microbiologyopen (2020) 9: e974 (doi: 10.1002/mbo3.974; PMID:31797576).</p> <p>The 'seq_' series of files contains newly reported sequences of<br> episomal plasmids (pHcu190, pHcu229) and plasmid integrants into<br> the chromosome (contigDRAFT1, contigDRAFT2) from strain 63-R2.</p> <p>There are two versions for pHcu229, as this plasmid could only<br> be partially assembled (_asAssembled, 170458 bp) but could be<br> completed in silico (_inSilicoCompleted, 229124 bp).</p> <p>The 'tagMGE_' series of files contains the sequences of all<br> replicons (the main chromosome and all plasmids) with markup<br> of all mobile genetic elements (MGEs) for each of the<br> four strains of Halobacterium salinarum.</p> <p>The file dbHsAllStrainsTotal.fasta contains the complete sequences<br> of the chromosomes and plasmids in a single file.</p> <p>The dbHsAllStrainsCore.fasta contains the same set of sequences but<br> with strain-specific copies of mobile genetic elements removed. This<br> version was generated to facilitate inter-strain sequence comparison.<br> </p>
RNA-seq on rRNA depleted libraries from exponentially growing Halobacterium salinarum NRC-1 strains Δura3 and Δhlx2
GEO Series GSE99730. Halobacterium salinarum NRC-1. 6 samples. Type: Expression profiling by high throughput sequencing.
RosR is a haloarchaeal-specific transcription factor required for the response to extreme oxidative stress in Halobacterium salinarum NRC-1.
GEO Series GSE33980. Halobacterium salinarum NRC-1. 150 samples. Type: Expression profiling by array.
Halobacterium salinarum NRC-1 growth curve
GEO Series GSE12977. Halobacterium salinarum NRC-1. 52 samples. Type: Expression profiling by array.
Halobacterium salinarum NRC-1 VNG1451C transcription factor ChIP-chip with and without carbon sources
GEO Series GSE13498. Halobacterium salinarum NRC-1. 28 samples. Type: Genome binding/occupancy profiling by array.
Halobacterium salinarum NRC-1 growth curve, tiling arrays
GEO Series GSE12923. Halobacterium salinarum NRC-1. 53 samples. Type: Expression profiling by genome tiling array.
Halobacterium salinarum NRC-1 conditional ChIP-chip for transcription initiation factor IIB 4 (TFBd)
GEO Series GSE13108. Halobacterium salinarum NRC-1. 12 samples. Type: Genome binding/occupancy profiling by array.
Halobacterium salinarum NRC-1 total RNA hybridization of TFBd overexpression versus Reference sample
GEO Series GSE15788. Halobacterium salinarum NRC-1. 2 samples. Type: Expression profiling by genome tiling array.
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