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30 results for “Haloferax volcanii”
Haloferax volcanii theoretical proteome exported from HaloLex
<p>The theoretical proteome is derived from the annotated Haloferax volcanii DS2 genome (Hartmann et al, 2010).</p> <p>This proteome represents a Gold Standard Protein based annotation (Pfeiffer and Oesterhelt, 2015).</p> <p>Proteome data from Haloferax volcanii were comprehensively analyzed in a community-based effort (Schulze et al, 2020)</p> <p>Various proteome studies are based on versions of this theoretical proteome. Different versions, which are cited in proteome papers, are made available in this series of Zenodo uploads.</p>
Identification of structural and regulatory cell-shape determinants in Haloferax volcanii
<p>Archaea are key players in various processes, yet little is known about their cell biology, including cell-shape determination. <em>Haloferax volcanii</em> is a haloarchaeon that can form both rod- and disk-shaped cells, depending on growth conditions. In this study, we used proteomics, genetics, and live-cell imaging to identify mutants that are defective in rod or disk formation. Diverse proteins were implicated to be important for cell-shape determination, including predicted transporters, transducers, signaling molecules, and transcriptional regulators. We identified and phenotypically characterized two deletion strains, strains missing rod-determining factor A (RdfA) and disk-determining factor A (DdfA), which are required for rod and disk formation, respectively. We also identified an actin homolog, volactin, which we characterized with live-cell imaging and determined to be dynamic and important for disk-shape determination.<br><br>This Zenodo project includes the CellProfiler pipeline (.cpproj file) used for analyzing and quantifying cell-shape images. Additionally, the cell-shape images taken during the proteomics sample collection (comparing H53, ∆<em>rdfA</em>, and ∆<em>ddfA </em>at early- and late-log growth phases) are provided. This project also includes whole genome sequencing Illumina files for H53, ∆<em>rdfA</em>, ∆<em>sph3</em>, ∆<em>ddfA</em>, JK3, and JK5.<br><br>These data accompany:<br>Schiller, H., Hong, Y., Kouassi, J., Rados, T., Kwak, J., DiLucido, A., Safer, D., Marchfelder, A., Pfeiffer, F., Bisson, A., Schulze, S., and Pohlschroder, M. 2024. Identification of structural and regulatory cell-shape determinants in Haloferax volcanii. Nat Commun 15(1):1414. https://doi.org/10.1038/s41467-024-45196-0.</p>
Data and script for Laass et. al "Characterization of the transcriptome of Haloferax volcanii with mixed RNA-Seq"
<p>Data and script to accompany the manuscript "Characterization of the transcriptome of Haloferax volcanii with mixed RNA-Seq".</p>
Haloferax volcanii strains
<p>Movies with experimental results of scientific paper "Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum" <strong>Movie S1</strong>. Swimming behavior of <em>Hfx. volcanii</em> MT2 transformed with pAS7 (HL-B2-R).</p> <p><strong>Movie S2</strong>. Swimming behavior of <em>Hfx. volcanii</em> MT2 transformed with pAS6 (HL-B1-R).</p> <p><strong>Movie S3</strong>. Swimming behavior of <em>Hfx. volcanii</em> MT2 transformed with pAS5 (HL-B1B2-R).</p> <p><strong>Movie S4</strong>. Swimming behavior of <em>Hfx. volcanii</em> MT2 transformed with with pMT21 (HV-A1A2).</p>
Transciptome profile of TrmB and TbsP in Haloferax volcanii [RNA-seq]
GEO Series GSE248564. Haloferax volcanii DS2. 39 samples. Type: Expression profiling by high throughput sequencing.
Transciptome profile of TrmB and TbsP, Genome-wide binding of TbsP (HVO_2861) in Haloferax volcanii
GEO Series GSE248566. Haloferax volcanii DS2. 63 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide binding of TbsP (HVO_2861) in Haloferax volcanii [CHIP-seq]
GEO Series GSE248565. Haloferax volcanii DS2. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The TroR transcription factor regulates iron homeostasis in the halophilic archaeon Haloferax volcanii
GEO Series GSE240622. Haloferax volcanii. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii
GEO Series GSE103893. Haloferax volcanii DS2. 16 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Evolution of genome architecture in Archaea: spontaneous generation of a new chromosome in Haloferax volcanii by homologous recombination
GEO Series GSE108201. Haloferax volcanii. 4 samples. Type: Other.
The TroR transcription factor regulates iron homeostasis in the halophilic archaeon Haloferax volcanii [RNA-Seq]
GEO Series GSE240621. Haloferax volcanii. 9 samples. Type: Expression profiling by high throughput sequencing.
The TroR transcription factor genome-wide binding analysis in the halophilic archaeon Haloferax volcanii [ChIP-Seq]
GEO Series GSE240518. Haloferax volcanii. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The chromatin landscape of the euryarchaeon Haloferax volcanii
GEO Series GSE207470. Haloferax volcanii DS2. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
Transcription analysis for the growth of Haloferax volcanii on L-alanine and ammonium chloride
GEO Series GSE130934. Haloferax volcanii. 6 samples. Type: Expression profiling by array.
Studying the long-term adaptation of Haloferax volcanii to low salt conditions: transcriptomic and genetic analyses
GEO Series GSE278471. Haloferax volcanii. 6 samples. Type: Expression profiling by high throughput sequencing.
GlpR functions as a global DeoR-type regulator of metabolic gene transcription in the haloarchaeon Haloferax volcanii
GEO Series GSE77589. Haloferax volcanii. 12 samples. Type: Expression profiling by array.
Genome-wide binding (ChIP-Seq) of histone-like protein (HstA) of Haloferax volcanii
GEO Series GSE186415. Haloferax volcanii DS2. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide gene expression Haloferax volcanii under oxidative stress
GEO Series GSE204840. Haloferax volcanii. 30 samples. Type: Expression profiling by high throughput sequencing.
Revealing the small proteome of Haloferax volcanii by ribosome profiling and small-protein optimised mass spectrometry
GEO Series GSE208086. Haloferax volcanii. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Structural and functional adaptation of Haloferax volcanii TFEα/β
GEO Series GSE101134. Haloferax volcanii. 4 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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