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67 results for “High Atlas”
Additional data: Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiring
<p>This repository provides additional data for the manuscript titled "Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiring", currently under revision at Nature Genetics. The primary data cohort has been deposited in the HTAN data portal. This repository includes processed 10x Xenium spatial transcriptomic data for six TH-MYCN mice (three chemotherapy-treated and three treatment-naive) as well as processed scRNA-seq data for CHLA15 and CHLA20 neuroblastoma (NBL) cells. The scRNA-seq data includes mono-cultured, co-cultured cells with THP-1 macrophages, and co-culture cells treated with Afatinib/CRM197. </p>
ESM Atlas v0 random sample of high confidence predicted protein structures
<p>A random sample out of the 225M high confidence predictions in the ESM Atlas v0 dataset introduced in "Evolutionary-scale prediction of atomic level protein structure with a language model.".<br> All predictions can be accessed in the ESM Metagenomic Atlas (<a href="https://esmatlas.com/">https://esmatlas.com</a>) open science resource, released on 2022-11-01.<br> High confidence is defined as mean pLDDT > 0.7 and pTM > 0.7 and corresponds to ∼36% of the total 617M proteins folded.<br> This is the random sample used for analysis in the paper as well as visualization on the <a href="http://esmatlas.com/">esmatlas.com</a> Explore page.<br> Sample size: 999,520 based on 999,996 unique randomly sampled IDs and 0.05% missing data in the processing pipeline.</p>
High-Resolution Heterogeneous Digital PET [18F]FDG Brain Phantom based on the BigBrain Atlas
<p>We present the design of a digital phantom that tries to overcome the problems of the current PET digital brain phantoms, particularly for the simulation of simultaneous PET-MRI data sets. We propose a new brain digital brain phantom based on the BigBrain atlas, a free, publicly available tool that provides considerable neuroanatomical insight into the human brain with an ultrahigh-resolution 3D model of a human brain at nearly cellular resolution of 20 micrometers. We used the histology maps, the classified tissue maps and the MRI image of the BigBrain atlas, as well as the Hammersmith atlas and a PET [18F]FDG template as inputs to create an instance of this ultra high-resolution heterogeneous PET-MRI phantom.</p> <p>Full details of this phantom in Medical Physics: "Technical Note: Ultra high‐resolution radiotracer‐specific digital pet brain phantoms based on the BigBrain atlas", <a href="https://doi.org/10.1002/mp.14218">10.1002/mp.14218.</a></p> <p>You can find codes examples for reading the data at https://github.com/mabelzunce/PETBrainPhantoms </p> <p>Please cite this paper if you use this phantom in your work:</p> <p>Belzunce, M.A. and Reader, A.J. (2020), Technical Note: Ultra high‐resolution radiotracer‐specific digital pet brain phantoms based on the BigBrain atlas. Med. Phys., 47: 3356-3362. doi:<a href="https://doi.org/10.1002/mp.14218">10.1002/mp.14218</a></p>
Figs 2–9. 2–4, 8–9 in Hydroporus toubkal sp. nov. from the High Atlas, Morocco, a new member of the H. longulus group (Coleoptera: Dytiscidae: Hydroporinae)
Figs 2–9. 2–4, 8–9 – Hydroporus toubkal sp. nov.: 2 – median lobe of aedeagus in ventral view; 3 – median lobe in lateral view; 4 – left paramere; 8 – gonocoxosternum; 9 – gonocoxae. 5 – H. longulus Mulsant & Rey, 1861, median lobe of aedeagus in lateral view (adapted from FERY 1999). 6 – H. nevadensis Sharp, 1882, median lobe of aedeagus in lateral view (adapted from FERY 1999). 7 – H. jacobsoni Zaitzev, 1927, median lobe of aedeagus in lateral view (adapted from FERY 2009).
Moroccan High Atlas characterisation_SHAPEFILES
<p>The zip file contains 9 shapefiles, produced within the research work published in D'ambrosio & Castangia 2024 - NO ATLAS FOR THE HIGH ATLAS? A BIO-PHYSICAL AND HUMAN CHARACTERIZATION OF THE MOROCCAN HIGH ATLAS LANDSCAPES FOR BIOCULTURAL AND SOCIOECOLOGICAL RESEARCH.</p> <p>The shapefiles are:</p> <ul> <li>Climatic stations</li> <li>Dams</li> <li>Geology</li> <li>Mineral deposits</li> <li>Municipalities</li> <li>Rivers</li> <li>Soils</li> <li>Study area borders</li> <li>Tribes</li> </ul> <p> </p>
Plate XXIII, Figs K.1–K.9 – Type K (Morocco, High Atlas, M'Goun Massif). K.1, adult ♂b, sclerotized apex of aedeagus; K.2, brachypterous adult ♂b, mesal field with sensilla; K.3, adult ♂b, hemitergal lobes, lateral view; K.4, pointed paraprocts of nymph, ventral view; K.5, cerci of nymph, ¾ lateral view; K.6, tergites of nymph, dorsal view; K.7, head, pronotum and mesonotum of macropterous♀ nymph; K.8, adult ♂b, head and pronotum; K.9, adult ♂b, sclerotized apex of aedeagus. in Steps towards a revision of the Perla bipunctata Pictet, 1833 species complex (Plecoptera: Perlidae)
Plate XXIII, Figs K.1–K.9 – Type K (Morocco, High Atlas, M'Goun Massif). K.1, adult ♂b, sclerotized apex of aedeagus; K.2, brachypterous adult ♂b, mesal field with sensilla; K.3, adult ♂b, hemitergal lobes, lateral view; K.4, pointed paraprocts of nymph, ventral view; K.5, cerci of nymph, ¾ lateral view; K.6, tergites of nymph, dorsal view; K.7, head, pronotum and mesonotum of macropterous♀ nymph; K.8, adult ♂b, head and pronotum; K.9, adult ♂b, sclerotized apex of aedeagus.
Fig. 1. A in Sauropod dinosaur remains from a new Early Jurassic locality in the Central High Atlas of Morocco
Fig. 1. A. Geological map of the Haute Moulouya Basin, Central High Atlas of Morocco, showing the location of the NHMUK PV R36834 site (based on Saâdi et al. 2012). B. Geographic location of the studied area (asterisk).
Fig. 3 in Sauropod dinosaur remains from a new Early Jurassic locality in the Central High Atlas of Morocco
Fig. 3. Line drawings of cervical vertebrae of Eusauropoda indet. (NHMUK PV R36834) from the Early Jurassic of the Haute Moulouya Basin, Morocco. Vertebra 1 (A) and vertebra 2 (B), in right lateral (A, B) and left lateral (A, B), anterior (A, B), posterior (A, B), ventral (A, B), and dorsal (A, B) 1 1 2 2 3 3 4 4 5 5 6 6 views.
Fig. 5 in Sauropod dinosaur remains from a new Early Jurassic locality in the Central High Atlas of Morocco
Fig. 5. Strict consensus trees obtained from addition of NHMUK PV R36834 to the data matrices of Carballido et al. 2015 (A) and McPhee et al. 2015 (B). Black circle indicates node for Eusauropoda. Taxa basal to Sauropoda collapsed for simplicity.
Fig. 4. Morphological comparisons between Lower and Middle Jurassic African sauropod middle cervical vertebrae. A in Sauropod dinosaur remains from a new Early Jurassic locality in the Central High Atlas of Morocco
Fig. 4. Morphological comparisons between Lower and Middle Jurassic African sauropod middle cervical vertebrae. A. Pulanesaura (BP/1/6199; McPhee et al. 2015: fig. 4). B. Jobaria tiguendis (MNN TIG F40-49; PDM personal observation 2013). C. Eusauropoda indet. (NHMUK PV R36834). D. Spinophorosaurus nigerensis (Remes et al. 2009: fig. 3A). Scale bars 100 mm.
The cacao gene atlas: A transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L
Open the record for dataset details and reuse information.
Data set for initializing and forcing of high-resolution local area model implementations in two ATLAS case study areas, Rockall Bank and Condor Seamount
<p>The data set includes all necessary data for set up, initial and boundary conditions of high-resolution local area model implementations using the ROMS-AGRIF model in two case study areas, Rockall Bank and Condor Seamount, conducted as part of the EU ATLAS project. The data include all computational grids, initialization fields (temperature, salinity) and boundary conditions (temperature salinity, currents, sea surface height) for each case study area.</p>
Ultra-high-resolution diffusion MRI atlas of CD1 embryonic mouse brains at E10.5-E15.5.
<p>This dataset is assciated with the paper "A Spatiotemporal Continuum of Embryonic Mouse Brain Development Built on Diffusion MR Microscopy for Probing Dynamic Gene-Neuroanatomy" on PNAS. For each stage, average FA (fractional anisotropy) and DEC (directionally encoded colormap) images (n=5) are provided. <br> <br> </p>
Data and Code for: Validating ATLAS: a regional-scale high-throughput tracking system
<p>Data and code for the manuscript: <strong>Validating ATLAS: a regional-scale high-throughput tracking system</strong></p>
Dataset on: First record of Brongersma's toad Barbarophryne brongersmai (Anura, Bufonidae) in the central High Atlas Mountains, Morocco.
<p>Brongersma’s toad Barbarophryne brongersmai is known in the southern Moroccan Atlantic coast, in the Anti–Atlas, in the arid plain of Marrakech, and in several localities in North–western Algeria. However, its distribution in Morocco is far from clear and its range is not well known. We report a new record of B. brongersmai in Morocco, in the region of the central High Atlas. The habitat type in this region is different from areas where the species has been observed previously. It consists of temporary ponds, located between rock outcrops and filled by stormy rains or snow during the winter. We recommend conducting surveys to collect additional information about this toad in other Moroccan regions, such as in the Middle Atlas where suitable conditions for this species may exist.</p> <p> </p>
Regional E-Atlas of the Greater Phoenix Region: high-technology employment clusters, 2000.
These data represent high-technology employment clusters across central Arizona-Phoenix. These data are presented by industry: aerospace, bio-industry, information, software for the year 2000.
FIGURE 3 in Description of Paravulvus moroccanus sp. n. (Nematoda, Dorylaimida, Nygolaimidae) from the High Atlas Mountains, Morocco, with notes on the taxonomy of the genus
FIGURE 3. Paravulvus moroccanus sp. n. (female, SEM). A: Anterior region in subventral view. B: Lip region in frontal view. C: Caudal region. D: Vulva area. (Scale bars: A, B = 3 µm; C = 5 µm; D = 1 µm.)
FIGURE 2 in Description of Paravulvus moroccanus sp. n. (Nematoda, Dorylaimida, Nygolaimidae) from the High Atlas Mountains, Morocco, with notes on the taxonomy of the genus
FIGURE 2. Paravulvus moroccanus sp. n. (female, LM). A: Entire. B, C: Anterior region in median lateral view. D: Pharyngo-intestinal junction. E: Anterior region in median lateral view showing the mucro (arrow head) located at dorsal side of pharynx. F: Anterior body region in submedian lateral view. G, H: Vagina. I, J: Posterior body region. K: Posterior genital branch. L: Coelomocyte in dorsal position at level of oviduct-uterus junction. (Scale bars: A = 200 µm; B, C, F– H = 5 µm; D, I–L = 20 µm; E = 10 µm.)
FIGURE 1 in Description of Paravulvus moroccanus sp. n. (Nematoda, Dorylaimida, Nygolaimidae) from the High Atlas Mountains, Morocco, with notes on the taxonomy of the genus
FIGURE 1. Paravulvus moroccanus sp. n. (female). A: Neck region. B: Anterior region in median, lateral view. C: Lip region in lateral, surface view. D: Posterior genital branch. E: Posterior body region. F: Entire.
Distribution. Mountainous areas in Morocco (Rif, High and Middle Atlas) and Algeria (Grande and Petite Kabylie); historically it also occurred in W Tunisia but is now extinct there. A free-ranging population occurs in Gibraltar introduced there by the British in 1740. in Cercopithecidae
Distribution. Mountainous areas in Morocco (Rif, High and Middle Atlas) and Algeria (Grande and Petite Kabylie); historically it also occurred in W Tunisia but is now extinct there. A free-ranging population occurs in Gibraltar introduced there by the British in 1740.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.