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Tab and comma delimited versions of Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila)
<p><span><em><strong>Introduction</strong></em></span></p> <p>This archive includes a tab-delimited (tsv) and comma-delimited (csv) version of the <a href="http://www.discoverlife.org/mp/20q?act=x_checklist&guide=Apoidea_species">Discover Life bee species guide and world checklist </a>(Hymenoptera: Apoidea: Anthophila). Discover Life is an important resource for bee species names and this update is from Draft-55, November 2020. Data were accessed and transformed into a tsv file in August 2023 using <a href="https://www.globalbioticinteractions.org/">Global Biotic Interactions</a> (GloBI) <a href="https://github.com/globalbioticinteractions/nomer">nomer</a> software. GloBI now incorporates the Discover Life bee species guide and world checklist in its functionality for searching for bee interactions.</p> <p><span><strong>Update! New Dataset also includes Subgenera Names</strong></span></p> <p>A new, tab-delimited version of the Discover Life taxonomy as derived from Dorey et. al, 2023 can be found via Zenodo at <a href="https://doi.org/10.5281/zenodo.10463762">https://doi.org/10.5281/zenodo.10463762</a>. This version of the Discover Life world species guide and checklist includes subgeneric names.</p> <p><span><strong>Citation</strong></span></p> <p><strong>Please cite the original source for this data as:</strong></p> <blockquote> <p><strong>Ascher, J. S. and J. Pickering. 2022.<br>Discover Life bee species guide and world checklist (Hymenoptera: Apoidea: Anthophila).<br>http://www.discoverlife.org/mp/20q?guide=Apoidea_species </strong>Draft-56, 21 August, 2022</p> </blockquote> <p><span><strong><em>nomer</em></strong></span></p> <p>nomer is a command-line application for working with taxonomic resources offline. nomer incorporates many of the present taxonomic catalogs (e.g., catalog of life, ITIS, EOL, NCBI) and provides simple tools for comparing between resources or resolving taxonomic names based on one or more taxonomic name catalogs. Discover Life is in nomer version 0.5.1 and this full dataset can be recreated by installing nomer from <a href="https://github.com/globalbioticinteractions/nomer">https://github.com/globalbioticinteractions/nomer</a> and running</p> <blockquote> <p>$ nomer list discoverlife > discoverlife.tsv</p> </blockquote> <p><span><em><strong>Data Columns</strong></em></span></p> <p>Discover Life provides a world name checklist and includes other names (synonyms and homonyms) that refer to the same species. In the tsv file, the provided name is both the accepted, or checklist name, or "other name." All names will be listed as a providedName. Below is an example subset of the transformed version of the data.</p> <ul> <li>providedExternalId= link to name on Discover Life</li> <li>providedName=an accepted or "<em>other name</em>" in the Discover Life bee checklist. "Other names" can be synonyms or homonyms.</li> <li>providedAuthorship=authorship for the providedName</li> <li>providedRank=rank of the providedName</li> <li>providedPath=higher taxonomy of the providedName. This will be the same as the accepted name or resolvedName</li> <li>relationName=relationship between the "<em>other name</em>" and the bee name in the Discover Life checklist. It may include itself</li> <li>resolvedExternalID=an <strong>accepted name</strong> in the Discover Life bee checklist</li> <li>resolvedExternalId=link to name on Discover Life</li> <li>resolvedAuthorship=authorship of the accepted, or checklist name</li> <li>resolvedRank=rank of the accepted, or checklist name</li> <li>resolvedPath=higher taxonomy of the accepted, or checklist name</li> </ul> <p><span><em><strong>Changes</strong></em></span></p> <p>No major changes to format in this version.</p> <p><span><em><strong>References</strong></em></span></p> <p>Jorrit Poelen, & José Augusto Salim. (2022). globalbioticinteractions/nomer: (0.2.11). Zenodo. https://doi.org/10.5281/zenodo.6128011</p> <p>Poelen JH, Simons JD and Mungall CH. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics. <a href="https://doi.org/10.1016/j.ecoinf.2014.08.005">https://doi.org/10.1016/j.ecoinf.2014.08.005</a>.</p> <p>Seltmann KC, Allen J, Brown BV, Carper A, Engel MS, Franz N, Gilbert E, Grinter C, Gonzalez VH, Horsley P, Lee S, Maier C, Miko I, Morris P, Oboyski P, Pierce NE, Poelen J, Scott VL, Smith M, Talamas EJ, Tsutsui ND, Tucker E (2021) Announcing Big-Bee: An initiative to promote understanding of bees through image and trait digitization. Biodiversity Information Science and Standards 5: e74037. <a href="https://doi.org/10.3897/biss.5.74037">https://doi.org/10.3897/biss.5.74037</a></p> <p>Dorey, J.B., Fischer, E.E., Chesshire, P.R. et al. A globally synthesised and flagged bee occurrence dataset and cleaning workflow. Sci Data 10, 747 (2023). https://doi.org/10.1038/s41597-023-02626-w</p>
The mycobiome of the gut of willow wood borer, Xiphydria prolongata (Hymenoptera: Xiphydriidae): a rich source of rare yeasts
<p>A high-throughput amplicon sequencing as a culture-independent approach was used to identify the gut mycobiome of the willow wood borer <em>Xiphydria prolongata</em>. The findings of this study are significance in terms of the insect-fungal interactions and indicate the unexpected richness of the mycobiome and the presence of many rare yeast species in the wood borer gut. A total of 40 fungal genera were found, and among them, only one endophytic fungi, <em>Daldinia</em> (Hypoxylaceae), has been previously reported in <em>Xiphydria.</em> <em>Zygosaccharomyces siamensis</em> is the most prevalent ascomycete species, while <em>Rhodosporidiobolus colostri</em> is the most abundant basidiomycetous yeast in <em>X. prolongata</em>. Some of the species identified in here was known as very rare fungus such as <em>Skoua fertilis</em>, <em>Chaetomium nepalense, R. colostri </em>and<em> Vustinia terrae</em>. This study is also the first report to <em>S. fertilis </em>and<em> V. terrae</em> in the insect gut flora. These funguses most likely aid in the digestion of lignocellulose in the gut of wood borer. Therefore, further researches are required to know the source of acquisition and functional role of these yeast and their industrial potential.</p>
Figures 1-10 in Revison of Alongatepyris (Hymenoptera: Bethylidae) with description of a new species from Colombia
Figures 1-10. (1-5) Alongatepyris platunissimus: (1) head and mesosoma̡ dorsal view; (2) head and mesosoma̡ lateral view; (3) mandible̡ frontal view; (4) fore wing̡ dorsal view; (5) apex of metasoma̡ ventral view; (6-10) A. ingens sp. nov.: (6) head and mesosoma̡ dorsal view; (7) head̡ lateral view; (8) mandible̡ frontal view; (9) mesopleuron̡ dorsal view; (10) fore wing̡ dorsal view. Scale bar = 250 µm.
Fig. 2 in Astromesitius, a new genus of Mesitiinae (Hymenoptera, Bethylidae) from the Old World
Fig. 2. Hypopygium of Astromesitius gen. nov. A. A. olavoi gen. et sp. nov. (holotype, QBG) B. A. thionyi gen. et sp. nov. (holotype, UFES 118956) C. A. indistintus (Barbosa & Azevedo, 2011) gen. et comb. nov. (paratype, UFES) D. A. minutissimus (Móczár, 1971) gen. et comb. nov. (holotype, UFES 56528) E. A. quatei (Móczár, 1977) gen. et comb. nov. (holotype, BPBM).
Figures 51–55 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 51–55. Traumatomutilla bellica (Cresson, 1902), ♀, holotype. 51) Dorsal habitus, line 3mm. 52) Lateral habitus, line 3mm. 53) Head, frontal view. 54) T6 (pygidium), posterior view. 55) Holotype labels.
Figures 26–27 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 26–27. Traumatomutilla bifurca (Klug, 1821), ♀, lectotype, line 2mm. 26) Dorsal habitus. 27) Lateral habitus.
Figures 38–45 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 38–45. Traumatomutilla bifurca, ♂. 38, 42) Genitalia, dorsal view. 39, 43) Genitalia, ventral view. 40, 44) Genitalia, internal view (penial valve removed). 41, 45) Penial valve, external view.
Figures 66–69 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 66–69. Traumatomutilla pilkingtoni Bartholomay and Williams, sp. nov., ♀, holotype. 66) Dorsal habitus, line 2mm. 67) Lateral habitus, line 2mm. 68) Head, frontal view. 69) T6 (pygidium), posterior view.
Figures 63–65 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 63–65. "Traumatomutilla diabolica (Gerstaecker, 1874), ♀, holotype. 63) Head, frontal view. 64) T6 (pygidium), posterior view. 65) Holotype labels.
Figures 18–25 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 18–25. Traumatomutilla fascinata, ♂, holotype. 18, 22) Genitalia, ♂, dorsal view. 19, 23) Genitalia, ♂, ventral view. 20, 24) Genitalia, ♂, internal view (penial valve removed). 21, 25) Penial valve, ♂, external view.
Figures 28–31 in Traumatomutilla André miscellanea: Revision of the bellica, bifurca, diabolica, and vitelligera species groups, and a new group for the new species T. pilkingtoni Bartholomay and Williams (Hymenoptera: Mutillidae: Sphaeropthalminae: Dasymutillini)
Figures 28–31. Traumatomutilla bifurca, ♀, lectotype. 28) Head, frontal view. 29) T6 (pygidium), posterior view. 30) T2, lateral view. 31) Lectotype labels.
Fig. 3 in Systematics, Morphology and Biogeography Phylogeny of the Augochlora clade with the description of four new species (Hymenoptera, Apoidea)
Fig. 3. Paratypemaleof Augochlorellakelliae sp. nov.(A) Dorsalview; (B) frontalview of head; (C) ventral view of genitalia. Scale bar: Aand Bat 0.5 mm, Cat 0.25 mm.
Figs 10–18 in Three new species and new records of cuckoo bees of the genus Epeolus in Turkey (Hymenoptera: Apidae: Nomadinae)
Figs 10–18. Epeolus warnckei sp. nov. 10 – holotype, ♀, dorsal view; 11 – allotype,, dorsal view. 12–17 – holotype: 12 – head, frontal view; 13 – labrum; 14 – mesopleuron, lateral view; 15 – mesosoma; 16 – terga; 17 – sterna. 18 – allotype, pygidial plate.
Fig. 10 in Review of the genus classification of Abiinae (Cimbicidae, Hymenoptera)
Fig. 10. Topology of Abiinae after EW analysis. Other subfamilies of Cimbicidae collapsed, outgroup not shown. Allabia infernalis marked with red, taxa placed in Orientabia Malaise, 1934 according to Taeger et al. (2010) marked with green. Abia fasciata (Linnaeus, 1758) (type species of Zaraea) marked with blue, Abia sericea (Linné, 1767) (type species of Abia) marked with yellow.
Fig. 3 in Review of the genus classification of Abiinae (Cimbicidae, Hymenoptera)
Fig. 3. Habitus lateral, females, except D, which shows ovipositor (upside down). A. Abia akebii (Takeuchi, 1931) (NSMT). B. Abia berezowskii Semenov, 1896 (NRMS). C–D. Abia candens (Konow, 1887) (NHMD). E. Abia metallica Mocsáry, 1909 (NSMT). F. Abia pulcherrima Mallach, 1930 (NRMS). G. Abia niui Wei & Deng, 1999 (NMNH). H. Abia relativa Rohwer, 1910 (NSMT).
Fig. 6 in Review of the genus classification of Abiinae (Cimbicidae, Hymenoptera)
Fig. 6. Head, anterior view, males. A. Abia americana (Cresson, 1880) (NMNH). B. Abia berezowskii Semenov, 1896 (NRMS). C. Abia fulgens Zaddach, 1863 (NHMD). D. Abia melanocera Cameron, 1899 (NRMS). E. Abia sachalinensis Takeuchi, 1931 (NSMT). F. Abia sericea (Linné, 1767) (NSMT). Red arrows = antennomeres in club.
Fig. 8 in Review of the genus classification of Abiinae (Cimbicidae, Hymenoptera)
Fig. 8. Topology of Abiinae after IW analysis with k = 7. Other subfamilies of Cimbicidae collapsed, outgroup not shown. Allabia infernalis Semenov, 1896 marked with red; taxa placed in Orientabia Malaise, 1934 according to Taeger et al. (2010) marked with green. Abia fasciata (Linnaeus, 1758) (type species of Zaraea) marked with blue, Abia sericea (Linné, 1767) (type species of Abia) marked with yellow. Selected characters are mapped on the tree, see Discussion for further explanation.
Fig. 2. Habitus dorsal, males. A. Abia lewisii Cameron, 1887 in Review of the genus classification of Abiinae (Cimbicidae, Hymenoptera)
Fig. 2. Habitus dorsal, males. A. Abia lewisii Cameron, 1887 (NSMT). B. Abia metallica Mocsáry, 1909 (NSMT). C. Abia nitens (Linnaeus, 1758) (NHMD). D. Abia sericea (Linné, 1767) (NHMD). E. Abia triangularis (Takeuchi, 1931) (NSMT). Yellow arrows = depressions with hairy patches on abdominal terga.
Figures 1–13 in New records and diagnostic notes on large carpenter bees (Hymenoptera: Apidae: genus Xylocopa Latreille), from the Amazon River basin of South America
Figures 1–13. Dorsal habitus photographs of pinned, preserved specimens of females of Xylocopa (Neoxylocopa) species from the Amazon River basin, from the USNM collection. 1) X. (N.) aeneipennis. 2) X. (N.) amazonica. 3) X. (N.) aurulenta. 4) X. (N.) carbonaria. 5) X. (N.) cearensis. 6) X. (N.) fimbriata. 7) X. (N.) frontalis. 8) X. (N.) grisescens. 9) X. (N.) hirsutissima. 10) X. (N.) orthogonaspis. 11) X. (N.) similis. 12) X. (N.) suspecta. 13) X. (N.) tegulata.
Fig. 1 in Phylogenetic notes on the rare Mediterranean digger wasp Psenulus fulvicornis (Schenck, 1857) (Hymenoptera: Crabronidae) new to Switzerland
Fig. 1. Sampling sites of Psenulus fulvicornis (Schenck, 1857) (large filled circles) and Psenulus schencki (Tournier, 1889) (squares) used for the DNA barcode sequencing of the mitochondrial cox1 locus. Small filled circles show georeferenced distribution records of P. fulvicornis with confirmed determinations by Schmid-Egger (2002) together with newer records by Gayubo et al. (2012), Mokrousov & Popov (2016), Reder & Niehuis (2014), Standfuss & Standfuss (2012) and Zsolt (2008). The triangle represents the undetermined specimen (PSC-7) from Pisa, Italy.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.