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9 results for “Hyperoplus”
Supplementary material 2 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Table S2 : Explanation note: Museum IDs and collection data for specimens of Ammodytes tobianus used for morphological analyses only.
Supplementary material 1 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Table S1 : Explanation note: Supplementary metadata for specimens used for both morphological and genetic analyses; Museum and Sample IDs are specimen identifiers, BOLD Process IDs are unique codes automatically generated for each record on BOLD, GenBank Accession NOs represent sequence identifiers.
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
<p><span>Despite increasing sequencing efforts, numerous fish families still lack a reference genome, which complicates genetic research. One such understudied family is the sand lances (Ammodytidae, literally: 'sand burrower'), a globally distributed clade of over 30 fish species that tend to avoid tidal currents by burrowing into the sand. Here, we present the first annotated chromosome-level genome assembly of the great sand eel (<em>Hyperoplus</em> <em>lanceolatus</em>). The genome assembly was generated using Oxford Nanopore Technologies long sequencing reads and Illumina short reads for polishing. The final assembly has a total length of 808.5 Mbp, of which 97.1% were anchored into 24 chromosome-scale scaffolds using proximity-ligation scaffolding. The assembly is highly contiguous with a scaffold and contig N50 of 33.7 Mbp and 31.3 Mbp, respectively, and has a BUSCO completeness score of 96.9%. The presented genome assembly is a valuable resource for future studies of sand lances, as they are of great ecological and commercial importance and may also contribute to studies aiming to resolve the suprafamiliar taxonomy of bony fishes.</span></p>
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
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Figure 4 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Figure 4 - Plot of all analysed Ammodytes and Hyperoplus specimens onto the first and second discriminant functions based on a set of 19 morphometric characters. Circles include 95% of specimens in each species.
Figure 3 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Figure 3 - Plot of all analysed Ammodytes and Hyperoplus specimens onto the first and second discriminant functions based on a set of eight meristic characters. Circles include 95% of specimens in each species.
Figure 2 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Figure 2 - Radiograph of Common sand eel Ammodytes tobianus (Linnaeus, 1758) indicating the meristic characters evaluated from X-ray pictures. Depicted specimen: ZMH 26098-3, standard length 128.1 mm.
Figure 5 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Figure 5 - NJ dendrogram based on K2P pairwise genetic distances. Values at nodes indicate the result of the bootstrap test (10.000 pseudo replicates). Only values ≥ 50 are shown. For Ammodytes tobianus (grey box) and Hyperoplus lanceolatus all analysed individuals are shown. In case of Ammodytes marinus and Hyperoplus immaculatus the number of specimens is given in brackets.
Figure 1 from: Thiel R, Knebelsberger T (2016) How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods. ZooKeys 617: 139-164. https://doi.org/10.3897/zookeys.617.8866
Figure 1 - Sampling sites of sand lance species of the genera Ammodytes and Hyperoplus.
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