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78
datasets available to search
ShareScore release 0.9.0
Dataset results
78 results for “IN Cell Analyzer”
Picophytoplankton and bacteria total carbon estimates from cell counts analyzed with flow cytometry (FCM) from CCE-CalCOFI Augmented cruises in the California Current System, 2004 - 2023(ongoing).
Picophytoplankton populations and non-pigmented prokaryotes are sampled within the California Current Ecosystem (CCE) for abundances from 3 to 8 depths at CalCOFI stations. Seawater is collected from Niskin bottles and cells are fixed in the field aboard the survey cruises (since 2004, ongoing) with paraformaldehyde, and stained with a DNA-specific dye back in the laboratory. The cells are enumerated by an Altra flow cytometer (with a syringe pump for volumetric sample delivery) simultaniously with argon ion lasers, to distinguish three major populations of photoautotrophs (Prochlorococcus, Synechococcus, and pico-eukaryotes) and the assemblage of heterotrophic prokaryotes collectively referred to as H-Bact. FCM abundance estimates for each are converted to carbon biomass equivalents using mixed-layer estimates.
Data from: Effect of stretching on inflammation in a subcutaneous carrageenan mouse model analyzed at single-cell resolution
<p>Understanding the factors that influence the biological response to inflammation is crucial, due to its involvement in physiological and pathological processes, including tissue repair/healing, cancer, infections, and autoimmune diseases. We have previously demonstrated that in vivo stretching can reduce inflammation and increase local pro-resolving lipid mediators in rats, suggesting a direct mechanical effect on inflammation resolution. Here, we aimed to explore further the effects of stretching at the cellular/molecular level in a mouse subcutaneous carrageenan-inflammation model. Stretching for 10 minutes twice a day reduced inflammation, increased the production of pro-resolving mediator pathway intermediate 17-HDHA at 48h post carrageenan injection, and decreased both pro-resolving and pro-inflammatory mediators (e.g., PGE<sub>2</sub> and PGD<sub>2</sub>) at 96h. ScRNAseq analysis of inflammatory lesions at 96h showed that stretching increased the expression of both pro-inflammatory (<em>Nos2</em>) and pro-resolution (<em>Arg1</em>) genes in M1 and M2 macrophages at 96 hours. An intercellular communication analysis predicted specific ligand-receptor interactions orchestrated by neutrophils and M2a macrophages, suggesting a continuous neutrophil presence recruiting immune cells such as activated macrophages to contain the antigen while promoting resolution and preserving tissue homeostasis.</p>
Wound Healing and Fluorescence Analyzes of Theranekron D6 AppliedAML-12 and HepG2 cells
<p>This file includes original jpeg files of wound closure area calculation of AML-12 and HepG2 cells and fluorescence microscopy photos of TD6 applied AML-12 and HepG2 cells uniquely.</p>
Healthy and B-cell precursor Acute Lymphoblastic Leukemia (ALL) cells analyzed via CyTOF
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Data from: Effect of stretching on inflammation in a subcutaneous carrageenan mouse model analyzed at single-cell resolution
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Morphometric analysis of retinal ganglionic cells (3D confocal images) analyzed using filament tracer from Imaris software
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Picophytoplankton and bacteria total carbon estimates from cell counts analyzed with flow cytometry (FCM) from CCE LTER process cruises in the California Current region, 2006 - 2017.
Picophytoplankton populations and non-pigmented prokaryotes are sampled within the California Current Ecosystem (CCE) for abundances from various depths. Seawater is collected from Niskin bottles and cells are fixed in the field aboard the survey cruises (since 2004, ongoing) with paraformaldehyde, and stained with a DNA-specific dye back in the laboratory. The cells are enumerated by an Altra flow cytometer (with a syringe pump for volumetric sample delivery) simultaniously with argon ion lasers, to distinguish three major populations of photoautotrophs (Prochlorococcus, Synechococcus, and pico-eukaryotes) and the assemblage of heterotrophic prokaryotes collectively referred to as H-Bact. FCM abundance estimates for each are converted to carbon biomass equivalents using mixed-layer estimates.
NuSeT training dataset/model weights from (NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells)
<p>This is the Full NuSeT training dataset and model training weights used in paper: NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells <a href="https://www.biorxiv.org/content/10.1101/749754v1">https://www.biorxiv.org/content/10.1101/749754v1</a> (doi 10.1371/journal.pcbi.1008193), part of the training data comes from <a href="https://www.kaggle.com/c/data-science-bowl-2018">https://www.kaggle.com/c/data-science-bowl-2018</a></p>
Datasets accompanying Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer
<p>These datasets accompany the manuscript "Deep generative AI models analyzing circulating orphan non-coding RNAs enable accurate detection of early-stage non-small cell lung cancer".</p> <p>The datasets include:</p> <ul> <li> <p><code>metadata.tsv.gz</code> Phenotype information of the samples</p> </li> <li> <p><code>mirna_counts.tsv.gz</code> MicroRNA count matrix (for data normalization)</p> </li> <li> <p><code>oncrna_counts.tsv.gz</code> oncRNA count matrix</p> </li> <li> <p><code>orion/</code> Ensemble of Orion models</p> </li> </ul>
Laser capture microdissection of the ganglion cell layer for analyzing transcriptional responses induced by demyelination
GEO Series GSE245362. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Analyzing the immune cell population changes in the brain and the gut of PD mice
GEO Series GSE232840. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Next generation sequencing quantitatively analyzes transcriptomes of bone marrow derived mesenchymal stromal cells from Wild Type or prkcb-/- mice
GEO Series GSE119813. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
modENCODE_Lieb and White Lab: unltra-deep sequencing data of genomic DNA, chromatin input, and ChIP of Su(Hw) and H3K36me3 from S2 cells on Illumina Genome Analyzer.
GEO Series GSE27679. Drosophila melanogaster. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Calcium-induced transcript variation in neuronal cells analyzed with exon microarrays.
GEO Series GSE6976. Homo sapiens. 24 samples. Type: Expression profiling by array.
BirthSeq, a new method to isolate and analyze dated cells in different vertebrates
GEO Series GSE270283. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Deep sequencing analyzed the coverage of sgRNA in haploid stem cells.
GEO Series GSE115015. Mus musculus. 2 samples. Type: Other.
Using RNA-seq to analyze gene expression in the mouse lens epithelial cells alpha-TN4 overexpressing Vector, WT-CREB, KCREB, R314A-CREB, S133A-CREB, S133A-KCREB and S133A/R314A -CREB before and after
GEO Series GSE276922. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
RNA-sequence facilitates analyze changes of signaling pathways after cell reprogramming
GEO Series GSE243581. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profiles of human dermal fibroblasts and human pluripotent stem cells analyzed by bulk RNA-seq
GEO Series GSE224698. Homo sapiens. 69 samples. Type: Expression profiling by high throughput sequencing.
Next generation sequencing quantitatively analyzes transcriptomes of primary CLL cells tranfected with non-specific control (NSC) or ZAP-70 siRNA (+anti-IgM dataset)
GEO Series GSE149021. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.