Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
5
datasets available to search
ShareScore release 0.9.0
Dataset results
5 results for “INSDC”
Public sequence accessions from INSDC, COG-UK and CNCB and EPI_SET from GISAID for SARS-CoV-2 genome sequences in 2023-08-01 UShER tree
<p>Genome sequences and metadata for the accessions in the .tsv.gz (gzip-compressed tab-separated text) files are freely available from their corresponding sources:</p><ul><li>insdc.accessionNameDate.tsv.gz: INSDC (GenBank, ENA, DDBJ) sequences and metadata may be downloaded using NCBI Datasets: https://www.ncbi.nlm.nih.gov/datasets/taxonomy/2697049/ (7,361,734 accessions used on 2023-08-01)</li><li>cog.accessionNameDate.tsv.gz: COG-UK sequences and metadata may be downloaded from https://cog-uk.s3.climb.ac.uk/phylogenetics/latest (as of publication); most COG-UK sequences have been submitted to ENA and are available from INSDC/NCBI Datasets as well. (724,978 accessions used on 2023-08-01)</li><li>cncb.accessionNameDate.tsv.gz: Sequences and metadata from several databases at the China National Center for Bioinformation (CNCB) may be downloaded from GenBase: https://ngdc.cncb.ac.cn/genbase/ (26,604 accessions used on 2023-08-01)</li></ul><p>GISAID data are subject to restrictions on sharing described in https://gisaid.org/terms-of-use/. Genome sequences and metadata are available to registered GISAID users as part of EPI_SET_231106ax at https://doi.org/10.55876/gis8.231106ax (7,718,061 accessions used on 2023-08-01).</p>
Linked collectors and determiners for: INSDC Environment Sample Sequences.
Natural history specimen data linked to collectors and determiners held within, "INSDC Environment Sample Sequences". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/583d91fe-bbc0-4b4a-afe1-801f88263016">https://bionomia.net/dataset/583d91fe-bbc0-4b4a-afe1-801f88263016</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/583d91fe-bbc0-4b4a-afe1-801f88263016">https://gbif.org/dataset/583d91fe-bbc0-4b4a-afe1-801f88263016</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: INSDC Sequences.
Natural history specimen data linked to collectors and determiners held within, "INSDC Sequences". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d8cd16ba-bb74-4420-821e-083f2bac17c2">https://bionomia.net/dataset/d8cd16ba-bb74-4420-821e-083f2bac17c2</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d8cd16ba-bb74-4420-821e-083f2bac17c2">https://gbif.org/dataset/d8cd16ba-bb74-4420-821e-083f2bac17c2</a>. Formatted as a Frictionless Data package.
Processed INSDC dataset for MOV analysis
<p>A processed version of a mutation-annotated tree from open SARS-CoV-2 genomic data, originally compiled by UCSC researchers at https://hgwdev.gi.ucsc.edu/~angie/UShER_SARS-CoV-2/. This is used as input to an open-data version of the analysis in <em>A molnupiravir-associated mutational signature in global SARS-CoV-2 genomes</em>.</p>
Linked collectors and determiners for: INSDC Host Organism Sequences.
Natural history specimen data linked to collectors and determiners held within, "INSDC Host Organism Sequences". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/393b8c26-e4e0-4dd0-a218-93fc074ebf4e">https://bionomia.net/dataset/393b8c26-e4e0-4dd0-a218-93fc074ebf4e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/393b8c26-e4e0-4dd0-a218-93fc074ebf4e">https://gbif.org/dataset/393b8c26-e4e0-4dd0-a218-93fc074ebf4e</a>. Formatted as a Frictionless Data package.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.