Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
720
datasets available to search
ShareScore release 0.9.0
Dataset results
720 results for “Identification data”
Cirrus formation regimes - Data driven identification and quantification of mineral dust effect
<p>This repository contains the data for the paper: </p> <p>Authors: Kai Jeggle , David Neubauer , Hanin Binder and Ulrike Lohmann<br>Titel: Cirrus formation regimes - Data driven identification and quantification of mineral dust effect<br>Date: 2024</p> <p>Note that the scripts can be found in the accompanying code repository (https://github.com/tabularaza27/cloud_clustering)<br><br>Contents:<br><br>├── cirrus_cloud_trajectories.ftr<br>├── cluster_input_data.ftr<br>├── cluster_models<br>│ └── temperature_clustering_k4_12<br>│ ├── cloud_ids.npy<br>│ ├── model_params.json<br>│ └── trained_model.hdf5</p> <p>│ └── temperature_clustering_k4_24<br>│ ├── cloud_ids.npy<br>│ ├── model_params.json<br>│ └── trained_model.hdf5</p> <p>├── cluster_predictions.ftr<br>└── readme.txt<br><br>For more info, please have a look at the <em>readme.txt</em><br><br>This is an updated version of the data, containing updated models and predictions based on the Journal revisions</p>
DIPROMATS 2024 - Shared Task 2: testing data for narrative identification
<p>Narratives are causally connected sequences of events that are selected and evaluated as meaningful for a particular audience. They make sense of the world by identifying the significance of people, places, objects, and events in time. In international relations, international actors create strategic narratives to “construct a shared meaning of the past, present, and future of international politics to shape the behavior of domestic and international actors”</p> <p>DIPROMATS 2024 Task 2 is a multiclass multilabel classification problem. Given a series of predefined narratives of each international actor, systems must determine which narrative the tweets belong to. Systems will receive the description of each narrative and a few examples of tweets in both languages (English and Spanish) that belong to each of them (few-shot learning). A tweet may be associated with one, several or none of the narratives.</p> <p>The few-shot training data can be found here: <a href="https://doi.org/10.5281/zenodo.10820961" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.10820961</a></p> <p>These are the testing datasets for Englsih and Spanish. They are provided without the keys so the large language models can't be contaminated. If you are interested on testing your system, write anselmo@lsi.uned.es for details on submission and leaderboards.</p>
InterFlex WP3 data set_ SGAM diagrams_interface data base_service identification
<p>This data set contains the InterFlex demonstration use case descriptions in the form of SGAM diagrams as well as the interface data base which was used for different deliverables and the repective results within work package 3 "Impact and deployment analysis of the innovative solutions". There has also been one publication in this regard ( <a href="https://doi.org/10.1109/INDIN.2018.8472053">10.1109/INDIN.2018.8472053</a>)</p> <p>Furthermore, it includes the service mappings for the InterFlex (under GA 731289) demonstrators as an input for different WP3 3.1 subtasks, deliverbale (D3.2) as well as a scientific publication (ICRERA 2019, ID 239, online ISSN: 2572-6013)</p>
Exploring Data Evaluation Strategies for Enhanced Identification of Host Cell Proteins in Drug Products of Therapeutic Antibodies and Fc-Fusion Proteins
<p>This data repository contains all previously unpublished raw data files for the manuscript “Exploring Data Evaluation Strategies for Enhanced Identification of Host Cell Proteins in Drug Products of Therapeutic Antibodies and Fc-Fusion Proteins” by Wolfgang Esser-Skala, Marius Segl, Therese Wohlschlager, Veronika Reisinger, Johann Holzmann, and Christian G. Huber. See <em>readme.md</em> for further information.</p>
1QIsaa data collection (binarized images, feature files, and plotting scripts) for writer identification test using artificial intelligence and image-based pattern recognition techniques
<p><strong>The Great Isaiah Scroll (1QIsa<sup>a</sup>) data set for writer identification</strong></p> <p>This data set is collected for the ERC project:<br> The Hands that Wrote the Bible: Digital Palaeography and Scribal Culture of the Dead Sea Scrolls<br> PI: Mladen Popović<br> Grant agreement ID: 640497</p> <p>Project website: <a href="https://cordis.europa.eu/project/id/640497">https://cordis.europa.eu/project/id/640497</a><br> <br> <strong>Copyright (c) </strong> University of Groningen, 2021. All rights reserved.<br> <strong>Disclaimer and copyright notice for all data contained on this .tar.gz file:</strong></p> <p><strong>1)</strong> permission is hereby granted to use the data for research purposes. It is not allowed to distribute this data for commercial purposes.</p> <p><strong>2) </strong>provider gives no express or implied warranty of any kind, and any implied warranties of merchantability and fitness for purpose are disclaimed.</p> <p><strong>3) </strong>provider shall not be liable for any direct, indirect, special, incidental, or consequential damages arising out of any use of this data.</p> <p><strong>4) </strong>the user should refer to the first public article on this data set:<br> <br> <em>Popović, M., Dhali, M. A., & Schomaker, L. (2020). Artificial intelligence-based writer identification generates new evidence for the unknown scribes of the Dead Sea Scrolls exemplified by the Great Isaiah Scroll (1QIsa<sup>a</sup>). arXiv preprint arXiv:2010.14476.</em><br> <br> BibTeX:</p> <pre>@article{popovic2020artificial, title={Artificial intelligence based writer identification generates new evidence for the unknown scribes of the Dead Sea Scrolls exemplified by the Great Isaiah Scroll (1QIsaa)}, author={Popovi{\'c}, Mladen and Dhali, Maruf A and Schomaker, Lambert}, journal={arXiv preprint arXiv:2010.14476}, year={2020} }</pre> <p><strong>5) </strong>the recipient should refrain from proliferating the data set to third parties external to his/her local research group. Please refer interested researchers to this site for obtaining their own copy.</p> <p><strong>Organisation of the data:</strong></p> <p>The .tar.gz file contains three directories: images, features, and plots. The included 'README' file contains all the instructions.</p> <p>The 'images' directory contains NetPBM images of the columns of 1QIsa<sup>a</sup>. The NetPBM format is chosen because of its simplicity. Additionally, there is no doubt about lossy compression in the processing chain. There are two images for each of the Great Isaiah Scroll columns: one is the direct binarized output from the BiNet (<em>arxiv.org/abs/1911.07930</em>) system, and the other one is the manually cleaned version of the binarized output. The file names for the direct binarized output are of the format '1QIsaa_col<columnnr>.pbm', for example, '1QIsaa_col15.pbm'. And, for the cleaned version, the format is '1QIsaa_col<columnnr>_cleaned.pbm', for example, '1QIsaa_col15_cleaned.pbm'. Note: the image files are not in a separate directory; they will be extracted in the same place. However, due to the unique naming, there is no problem extracting them in one single directory.</p> <p>The 'features' directory contains feature files computed for each of the column images. There are two types of feature files: Hinge and Adjoined. They are distinguishable by their extension, for example, '1QIsaa_col15_cleaned.hinge' and '1QIsaa_col15_cleaned.adjoined'. They are also arranged in separate directories for ease of use.</p> <p>The 'plots' directory contains a simple python script to perform PCA on the feature files and then visualize them in a 3D plot. The file takes the location of feature files as an input. The 'README_plot' file contains examples of how-to-run in the terminal.</p> <p><strong>Brief description:</strong><br> According to ImageMagick's' identify' tool, the original images are in grayscale (.jpg) from Brill collection, in '8-bit Gray 256c'. These images pass through multiple preprocessing measures to become suitable for pattern recognition-based techniques. The first step in preprocessing is the image-binarization technique. In order to prevent any classification of the text-column images based on irrelevant background patterns, a specific binarization technique (BiNet) was applied, keeping the original ink traces intact. After performing the binarization, the images were cleaned further by removing the adjacent columns that partially appear on the target columns' images. Finally, few minor affine transformations and stretching corrections were performed in a restrictive manner. These corrections are also targeted for aligning the texts where the text lines get twisted due to the leather writing surface's degradation. Hence, the clean images are there in the directory along with the direct binarized images. No effort has been made to obtain a balanced set in any way.</p> <p><strong>Tools:</strong><br> <strong>Binarization:</strong><br> The BiNet tool is available for scientific use upon request (m.a.dhal(at)rug.nl)</p> <p><strong>Image Morphing:</strong><br> In the original article, data augmentation was performed using image morphing. The tool is available on GitHub:<br> https://github.com/GrHound/imagemorph.c</p> <p><strong>Features for writer identification:</strong><br> Lambert Schomaker<br> http://www.ai.rug.nl/~lambert/allographic-fraglet-codebooks/allographic-fraglet-codebooks.html<br> http://www.ai.rug.nl/~lambert/hinge/hinge-transform.html<br> <em><strong>1. </strong>L. Schomaker & M. Bulacu (2004). Automatic writer identification using connected-component contours and edge-based features of upper-case Western script. IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol 26(6), June 2004, pp. 787 - 798.<br> <strong>2. </strong>Bulacu, M. & Schomaker, L.R.B. (2007). Text-independent Writer Identification and Verification Using Textural and Allographic Features, IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), Special Issue - Biometrics: Progress and Directions, April, 29(4), p. 701-717.</em><br> <br> The features (hinge, fraglets) have been combined in a single MS Windows application, GIWIS, which is available for scientific use upon request (l.r.b.schomaker(at)rug.nl)</p> <p><strong>If you have any question, please contact us:</strong><br> Maruf A. Dhali <m.a.dhali(at)rug.nl><br> Lambert Schomaker <l.r.b.schomaker(at)rug.nl><br> Mladen Popović <m.popovic(at)rug.nl></p> <p><strong>Please cite our papers if you use this data set:</strong><br> <em><strong>1.</strong> Popović, M., Dhali, M. A., & Schomaker, L. (2020). Artificial intelligence based writer identification generates new evidence for the unknown scribes of the Dead Sea Scrolls exemplified by the Great Isaiah Scroll (1QIsa<sup>a</sup>). arXiv preprint arXiv:2010.14476.<br> <strong>2. </strong>Dhali, M. A., de Wit, J. W., & Schomaker, L. (2019). Binet: Degraded-manuscript binarization in diverse document textures and layouts using deep encoder-decoder networks. arXiv preprint arXiv:1911.07930.</em></p>
Identification at local and global scale: a case for using the Compact URI (CURIE) for life science data
<p>Panel A) A Local Resource Identifier (LRI) is not suited to global scale identification because of inevitable collisions: “9606” corresponds to a Pubmed article, a CGNC gene, a PubChem chemical, as well as an NCBI taxon (<em>Homo sapiens</em>), a BOLD taxon (<em>Bombycilla</em> <em>cedrorum</em>), and a GRIN taxon (<em>Catha</em> <em>edulis</em>)</p> <p>Panel B) Prefixing is often used to indicate the source of an LRI, but prefixes themselves are often undocumented and collide.</p> <p>Panel C) Prefixes may exist in alternate forms. When all of the alternates are not known, collapsing equivalent identifiers is tedious and incomplete.</p> <p>Panel D) CURIE syntax addresses these issues by having a prefix whose relationship with a resolving namespace is clearly documented.</p>
Data for: Bayesian Analysis for Remote Biosignature Identification on exoEarths (BARBIE) 2: Using Grid-Based Nested Sampling in Coronagraphy Observation Simulations for O2 and O3
<p>We present all of the data across our SNR and abundance study for the molecules O2 and O3 for an exoEarth twin. The wavelength range is from 0.515-1 micron, with 25 evenly spaced 20% bandpasses in this range. The SNR ranges from 3-20, and the abundance values range in log space in steps of 0.5 and/or 0.25 (all presented in VMR in the associated table). We present the lower and upper wavelength per bandpass, the input O2 and O3 values (abundance case), the retrieved O2 and O3 values (presented as the log10(VMR)), the lower and upper limits of the 68% credible region (presented as the log10(VMR)), and the log-Bayes factor for O2 and O3. For more information about how these were calculated, please see Bayesian Analysis for Remote Biosignature Identification on exoEarths (BARBIE) 2: Using Grid-Based Nested Sampling in Coronagraphy Observation Simulations for O2 and O3, accepted and currently available on arXiv. </p> <p>To open this csv as a Pandas dataframe, use the following command:</p> <p>your_dataframe_name = pd.read_csv(f'zenodo_table.csv', dtype={'Input O2': str, {'Input O3': str}})</p>
Data for "Identification of 4876 Bent-Tail Radio Galaxies in the FIRST Survey using Deep Learning Combined with Visual Inspection"
<p>The data are the full versions of tables that will be published in the manuscript titled "Identification of 4876 Bent-Tail Radio Galaxies in the FIRST Survey using Deep Learning Combined with Visual Inspection" by The Astrophysical Journal Supplement Series.</p> <p>The table file named "FIRST_bt_table1.csv" is the full table for "A catalog of 4876 BTRGs identified from VLA FIRST survey". </p> <p>The table file named "FIRST_bt_table2.csv" is the full table for "Cluster details for BTRGs". </p>
Extended data for Manuscript: Identification of potential biological targets of oxindole scaffolds via in silico repositioning strategies
<p>This is the Extended Data for the manuscript "<strong>Identification of potential biological targets of oxindole scaffolds via <em>in silico</em> repositioning strategies" </strong>submitted to F1000 Research.</p> <p>Extended Data include a list of all the accession codes as mentioned in the text, the results of 2D fingerprint-based similarity analyses and ligand-protein complexes predicted by rigid docking and Induced Fit Docking calculations.</p>
A data set on "Utilizing Constant Energy Difference between sp-Peak and C 1s Core Level in Photoelectron Spectra for Unambiguous Identification and Quantification of Diamond Phase in Nanodiamonds"
<p>The data set to paper: </p> <p>Utilizing Constant Energy Difference between sp-Peak and C 1s Core Level in Photoelectron Spectra for Unambiguous Identification and Quantification of Diamond Phase in Nanodiamonds</p> <p>Oleksandr Romanyuk1,*, Štěpán Stehlík1,2, Josef Zemek1, Kateřina Aubrechtová Dragounová1,3 and Alexander Kromka1</p> <p>1 Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic<br>2 New Technologies—Research Centre, University of West Bohemia, Univerzitní 8, 306 14 Pilsen, Czech Republic<br>3 Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, 115 19 Prague, Czech Republic</p> <p>* corresponding author: romanyuk@fzu.cz</p> <p>Data manager: Kristýna Dostálová: dostalovak@fzu.cz</p> <p>Date of data collection: 1. 1. 2024 - 15. 03. 2024</p> <p>All the data showed in the pictures are provided in X-Y format with described sample. Always, the respective Figure to which the data belong is provided in high resolution. <br>The data are in the following formats: <br>Figure 1: tiff, csv<br>Figure 2: tiff, csv<br>Figure 3: tiff, csv<br>Figure 4: tiff, csv<br>Figure 5: tiff, csv</p> <p>Data acquistion and processing is provided in the Experimental part in the publication: DOI:10.3390/nano14070590</p>
Hailstorm Identification and Tracking over Brazil (HIToB): A Storm Polygons Database From GOES ABI Data from 2018 to 2023
<p>This dataset comprises a detailed record of deep convective storm events tracked across South America from 2018 to 2023, utilizing brightness temperature (BT) data from Channel 13 of the GOES-16 Advanced Baseline Imager (ABI) and the TATHU (Tracking and Analysis of Thunderstorms) toolset, that caused hail-fall over Brazil. The database includes storm identification, tracking details, and associated meteorological variables such as brightness temperature statistics inside the storm polygon at each scene and event classifications (e.g., spontaneous generation, continuity, split, merge). The storms were detected and tracked based on brightness temperature threshold of 235 K, with tracking data refined by a 10% overlap criterion between sequential scenes. The tracked convective systems were filtered for intersections in space and time with verified hail reports from Prevots group. The whole family of storm polygons that matched the reports were exported to this database with SpatiaLite enabled dtaa format, in order to make it easier for spatial data queries and analysis. Some example queries using Python library SQLAlchemy are displayed in the code repository as well as the process of creating the tables in the database.<br><br>The data is organized in three tables: "storms", "storm_events" and "intersections". In table "storms" are the records of storm families identifier. Each identifier represents a sequence of storm polygons tracked over subsequent satellite scenes. Table "storm_events" holds the evolution of the storm's geometry through its lifecycle, including BT's mean, minimum and standard deviation inside the storm polygon; as well as storm's pixel count (i.e. storm size). Intersections table stores every instance where a storm event polygon intersects with a hailstorm report's buffer at the corresponding time. In total, there are 9893 intersections belonging to 2172 unique storm families.</p>
ImUnipen image data set for writer identification (N=208) - vectorial handwriting converted to usable images
<p><br> ==============<br> Terms of Usage<br> ==============</p> <p>The ImUnipen data set is intended for non-commercial, scientific use,<br> and is distributed under auspices of the Unipen Foundation.</p> <p>Please always refer to the following paper in IEEE PAMI when using<br> the ImUnipen data set:</p> <p> Bulacu, M.; Schomaker, L.<br> Text-Independent Writer Identification and Verification<br> Using Textural and Allographic Features<br> Pattern Analysis and Machine Intelligence, IEEE Transactions on<br> Volume 29, Issue 4, April 2007 Page(s):701 - 717</p> <p>The ImUnipen data set is derived from the Unipen (unipen.org)<br> data set of on-line (i.e., vectorial, xy) handwriting.<br> The xy-coordinates and a line-generator algorithm are used<br> to generate a raster image, as if the data were optically scanned.</p> <p>Contents: for 208 writers, there are two PNG images per writer of<br> an artificially constructed table of naturally written words (49MByte).<br> These words are pasted onto a white page. For systematics reasons,<br> we call such a page a Paragraph, see below.</p> <p>The file names are organized as (example):</p> <p> Writ990221.Doc01.Par00.png<br> Writ990221.Doc01.Par01.png</p> <p> meaning: writer number 990221, document 01 (there exists only Doc01)<br> and the image with artificial "paragraph" of isolated words "Par00"<br> and "Par01".</p> <p>The Par00 and Pa01 images are typically used as the query<br> and best match in a leave-one-out setting for writer identification.<br> For instance, Par00 is the query, and Par01 is added to the total set<br> of all other images as the attractor for an identification search.</p> <p>For these experiments, word labels are not given in this data set,<br> on purpose, as the goal is to test recognition-free writer identification<br> methods.</p> <p>For a description of the regular<br> Unipen data set, please visit http://unipen.org</p> <p>Lambert Schomaker constructed this set in 2005</p>
Identification and Functional Characterization of an Alternative Cancer-derived PD-L1 Isoform (supplemental data)
<p>The enclosed files contain all of the supplemental data from: Identification and Functional Characterization of an Alternative Cancer-derived PD-L1 Isoform. The files include the complete tables in CSV-formatted files.</p>
FitHiChIP: Identification of significant chromatin contacts from HiChIP data
<p>FitHiChIP is a computational method for identifying chromatin contacts among regulatory regions such as enhancers and promoters from HiChIP/PLAC-seq data.</p> <p><strong>Functionalities</strong> of FitHiChIP include:</p> <p>1) Calling significant interactions / loops / contacts from a HiChIP / PLAC-seq data </p> <p>2) Identifying peaks (enriched segments) from a HiChIP data (i.e. HiChIP peak caller)</p> <p>3) Finding differential loops among non-differential loci between two different categories of HiChIP samples, each with one or more replicates.</p> <p><strong>GitHub page</strong>: <a href="https://github.com/ay-lab/FitHiChIP">github.com/ay-lab/FitHiChIP</a></p> <p><strong>Documentation</strong>: <a href="https://ay-lab.github.io/FitHiChIP/">https://ay-lab.github.io/FitHiChIP/</a></p> <p><strong>Citation</strong>: Please check the above documentation regarding citation of FitHiChIP</p> <p>About this repository: All the data and results provided here correspond to the published manuscript. The file <strong>Data_Summary.xlsx</strong> summarizes for each figure, corresponding tables storing the related datasets.</p>
Data From: Harnessing Deep Belief Networks for Selective HDAC6 Inhibitors Identification
<p>This dataset contains the results from virtual screening of SPECS library after predicting the selectivity of molecules against HDAC6 over using a Deep Belief Network model that was trained and tested by the authors.</p> <p>The docking poses of 10 molecules with best docking scores were given along with their MMGBSA scores. </p> <p>The MD trajectory files along with the analysis were also provided for the selected three molecules as well as the reference molecule (co-crystalized ligand).</p>
xPore: Identification of differential RNA modifications from nanopore direct RNA sequencing - SGNEx data
<p>xPore is a Python package for identification and quantification of differential RNA modifications from direct RNA sequencing.</p> <p>The detailed usage is documented at <a href="https://xpore.readthedocs.io/en/latest/">https://xpore.readthedocs.io/en/latest</a>, while all scripts and source code are available at <a href="https://github.com/GoekeLab/xpore">https://github.com/GoekeLab/xpore</a>.</p> <p>All the preprocessed datasets used in the paper are provided here. </p> <p>Please cite our paper below when using these data.<br> Ploy N. Pratanwanich et al. "Detection of differential RNA modifications from direct RNA sequencing of human cell lines." bioRxiv (2020).</p>
Research Data Identification - RDAlliance
<p>A diagram that aims to align with an elaboration of the Research Data Alliance Dynamic Data Citation Working Group recommendations, as documented in:</p> <p>Andreas Rauber, Ari Asmi, Dieter van Uytvanck, and Stefan Pröll. (2016). Identification of reproducible subsets for data citation, sharing and re-use. https://www.force11.org/sites/default/files/d7/project/81/ieee-tcdl-dc-2016_paper_1.pdf</p> <p>(Which later lead to: Rauber, Andreas, Asmi, Ari, van Uytvanck, Dieter, & Proell, Stefan. (2015). Data Citation of Evolving Data: Recommendations of the Working Group on Data Citation (WGDC). https://doi.org/10.15497/RDA00016)</p>
Data for: Unmasking the Effects of Orthography, Semantics, and Phonology on 2AFC Visual Word Perceptual Identification
<p>This data was used in analyses for "Unmasking the Effects of Orthography, Semantics, and Phonology on 2AFC Visual Word Perceptual Identification".</p>
Processed data for "Model identification of neural encoding (MINE)" publication
<p>This dataset contains mouse and zebrafish data processed by MINE. These datafiles were used to generate the publication figures for the mouse cortical dataset [m<em>usall.hdf5</em>] (Figure 5) and the zebrafish whole-brain [<em>main_analysis.hdf5</em>] (Figures 6 and 7) and reticulospinal datasets [r<em>s_analysis.hdf5</em>] (Figure 6).</p> <p> </p> <p><em>Musall.hdf5 </em>contains reordered data from "Musall, S., Kaufman, M.T., Juavinett, A.L. <em>et al.</em> Single-trial neural dynamics are dominated by richly varied movements. <em>Nat Neurosci</em> <strong>22</strong>, 1677–1686 (2019)."</p> <p>The contents of each dataset are described in <em>DataContent_xxx.pdf</em></p>
Data set and classification method for low quality web traffic identification in video marketing campaigns
<p>Final outcomes of the InPreVi (AI4Media) project developed in 2022. </p> <p>1. Data set describing the statistics of the video ad marketing campaigns</p> <p>2. Script for web traffic classification</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.