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3 results for “Immcantation”
Immcantation Introductory Tutorial Data
<p>Necessary datasets to run the <a href="http://immcantation.org">Immcantation</a> Introductory Tutorial. Below is the description of the files in the data set.</p><ul><li>input.fasta: Example data from "Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data" (Laserson et al. (2014)). Processed B cell receptor reads from one healthy donor (PGP1) 3 weeks after flu vaccination. As part of the processing, each sequence has been annotated with the isotype.</li></ul>
Immcantation 10x Tutorial Data
<p>Necessary datasets to run the Immcantation 10x Tutorial. Below is the description of the files in the data set. </p> <ul> <li>BCR_data_sample1.tsv: data corresponding to the first sample (sample 1) of the two samples analyzed in the 10x tutorial. This is the sample used to show the Change-O steps.</li> <li>filtered_contig_annotations.csv: filtered contig annotations file for sample 1, output of cellranger vdj.</li> <li>filtered_contig.fasta: sequence fasta file for sample 1, output of cellranger vdj.</li> <li>BCR_data.tsv: AIRR rearrangement file containing the data for both samples 1 and 2 used in the 10x tutorial.</li> <li>BCR.data_08112023.rds: R dataframe object containing the single-cell BCR sequencing data for both samples 1 and 2 used in the 10x tutorial.</li> <li>GEX.data_08112023.rds: Seurat object containing the single-cell gene expression data used in the 10x tutorial.</li> </ul>
Example data for Immcantation training legacy tutorials
<p>`bcr_phylo_tutorial.zip` is used in the <a href="https://immcantation.readthedocs.io/en/4.4.0/tutorials/dowser_tutorial.html">Reconstruction and analysis of B-cell lineage trees from single cell data using Immcantation</a> tutorial.</p> <p>`immcantation-BCR-Seurat-tutorial.zip` is used in the <a href="https://immcantation.readthedocs.io/en/4.4.0/tutorials/BCR_Seurat_tutorial.html">Integration of BCR and GEX data</a> tutorial. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.