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643 results for “Immune System”
Scaling in the Immune System and Computational Immunology: Lecture Series
<p>How different is the immune system in a human from that of a mouse? Do pathogens replicate at the same rate in different species? Answers to these questions have impact on human health since multi-host pathogens that jump from animals to humans affect millions worldwide.</p> <p>It is not known how rates of immune response and viral dynamics vary from species to species and how they depend on species body size. Metabolic scaling theory predicts that intracellular processes will be slower in larger animals since cellular metabolic rates are slower. We test how rates of pathogenesis and immune system response rates depend on species body size.</p> <p>We hypothesize that immune response rates are invariant with body size. Our work suggests how the physical architecture of the immune system and chemical signals within it may lead to nearly scale-invariant immune search and response.</p> <p>We fit mathematical models to experimental West Nile Virus (WNV, a multi-host pathogen) infection data and investigate how model parameters characterizing the pathogen and the immune response change with respect to animal mass.</p> <p>Phylogeny also affects pathogenesis and immune response. We use a hierarchical Bayesian model, that incorporates phylogeny, to test hypotheses about the role of mass and phylogeny on pathogen replication and immune response. We observe that:</p> <p><br> 1. Hierarchical models (informed by phylogeny) make more accurate predictions of experimental data and more realistic estimates of biologically relevant parameters characterizing WNV infection.</p> <p>2. Rates of WNV production decline with species body mass, modified by a phylogenetic influence.</p> <p> </p> <p>Our work is the first to systematically explore the role of host body mass in pathogenesis using mathematical models and empirical data. We investigate the complex interplay between the physical structure of the immune system and host body mass in determining immune response. The modeling strategies and tools outlined here are likely to be applicable to modeling of other multi-host pathogens. This work could also be extended to understand how drug and vaccine efficacy in humans may systematically differ from that in model organisms like mice, in which most initial experimental studies are conducted.</p> <p> </p>
Figure2. Generation of negative feedbacks gets tuned once a TCR completes stimulation beyond the threshold l. A TCell generates activation signal to BCell once it gets stimulation of its k-TCRs.-AIDEN: A Density Conscious Artificial Immune System for Automatic Discovery of Arbitrary Shape Clusters in Spatial Patterns
<p>A TCR at position p is stimulated if rp (x) - rn(x) > l. Figure 1 depicts this process. When a T<br> Cell receives stimulations on more than k receptors, it generates activation signal to a B Cell, as<br> represented in Figure2.</p>
Figure1. Static stimulation of a single TCR- The kinetic proofreading by the receptor on input x Є X forwards the receptor position p toward l. The receptor will generate negative feedback if p > β. The receptor will generate success signal when p== l.-AIDEN: A Density Conscious Artificial Immune System for Automatic Discovery of Arbitrary Shape Clusters in Spatial Patterns
<p>A TCR at position p is stimulated if rp (x) - rn(x) > l. Figure 1 depicts this process. When a T<br> Cell receives stimulations on more than k receptors, it generates activation signal to a B Cell, as<br> represented in Figure2.</p>
FIGURES 2 a-g -AIDEN: A Density Conscious Artificial Immune System for Automatic Discovery of Arbitrary Shape Clusters in Spatial Patterns
<p>The program was implemented in Matlab and tested with several patterns. The first, dataset1<br> consisted of 2 patterns each comprised of 100 points falling on two concentric circles of radii 10<br> and 20 respectively. The second, dataset2 consisted of 3 patterns each of 100 points falling on three<br> concentric circles of radii 10, 15, and 20 respectively. The model was further tested for its<br> capability to find clusters in patterns of open spatial form using dataset3 and dataset4 consisting of<br> 200 and 300 points falling on 2 and 3 concentric semi circles respectively. As shown in the<br> Figure2.a and Figure2.b, the algorithm is capable of determining spatial association of a data point<br> with other data points belonging to its appropriate circle only. The results successfully demonstrated<br> the capability of our model to automatically detect clean clusters of arbitrary shapes in the input<br> data represented in closed spatial form. The model was found even capable of determining clusters<br> of open spatial forms also, as shown in Figure2.c and Figure2.e. However, the output of the<br> algorithm was found affected by the values of the algorithm parameters k and a. In the present<br> experiment, k =8 and a =10 was sufficient for performing correct cluster associations. On the other<br> hand, correct clustering for the dataset2, could be obtained with 10NN estimation i.e. k =10, with<br> a.=15. Moreover setting k =15, with a.=15 was required for dataset4, as clustering error was<br> observed with k =10, with a.=15, as in Figure2.d. Figure2.f and Figure2.g show the correct<br> clustering even in presence of combination of open and closed form of input patterns. In each<br> figure, the first sub-plot shows the original data and the second sub-plot shows the clusters<br> identified by our program.</p>
Figure3. APCs A1-A4 connected within range of cohesion-factor-threshold form members of one ARB-AIDEN: A Density Conscious Artificial Immune System for Automatic Discovery of Arbitrary Shape Clusters in Spatial Patterns
<p>Figure3 depicts this process. The<br> model with the above specification then effectively detects self or non-self pathogens. In terms of<br> its application to the task of clustering, this interpretation means making the affinities high within<br> clusters and low across clusters. A pathogen corresponding to an outlier would not stimulate a TCR<br> sufficiently and may not form part of any ARB.</p>
Data: Fate of intravenously administered umbilical cord mesenchymal stromal cells and interactions with the host's immune system
<p>This data set includes all the raw data collected for the following article: "Fate of intravenously administered umbilical cord mesenchymal stromal cells and interactions with the host's immune system".</p>
A Study of TAK-981 in People With Advanced Solid Tumors or Cancers in the Immune System
ClinicalTrials.gov study NCT03648372. IPD Sharing: YES. Countries: 1. Publications: 1.
Effect of Probiotic Supplementation on the Immune System in Patients With Ulcerative Colitis in Amman, Jordan
ClinicalTrials.gov study NCT04223479. IPD Sharing: NO. Countries: 1. Publications: 14.
High temperatures are associated with decreased immune system performance in a wild primate
Open the record for dataset details and reuse information.
A multi-omics systems vaccinology resource to develop and test computational models of immunity: 1st challenge dataset and submissions
<p>The goal of the CMI-PB prediction contest is to foster a collaborative research community that can collectively tackle challenges and accelerates scientific progress beyond the capabilities of individual researchers or groups. The CMI-PB consortium has curated multi-source data from multiple individuals, encompassing Ab titers (around four antibodies/features), cell frequency (approximately 20 cell types/features), gene expression (roughly 50,000 RNA transcripts/features), and plasma proteomics (around 50 proteins/features). The challenge requires integrating these diverse data sources to predict different immune responses or tasks. Specifically, you will utilize multi-source data from several individuals on day 0 (baseline) to predict specific immune responses at later time points (1, 3, 7, and 14 days post-booster vaccination).</p> <p>The first CMI-PB challenge, which is an internal challenge, was conducted using datasets from 2020 (train) and 2021 (test). In the following sections, we provide detailed information on the datasets, challenge tasks, submission format, descriptions, and access to the necessary data files for participants to develop their models and make predictions.</p> <p><br><strong>A) Multiomics CMI-PB dataset:</strong></p> <p>We propose a study design that enables a systems-level understanding of the immune responses through computational modeling. Our cohort comprises aP vs. wP infancy-primed subjects boosted with Tdap. We recruit individuals born before 1995 (wP) and after 1996 (aP), collect baseline plasma and blood samples, and then at 1, 3, 7 and 14 days post booster vaccination.</p> <p>With the obtained samples processed, we generated omics data by:</p> <ul> <li> <p>Bulk PBMCs transcriptomics,</p> </li> <li> <p>Plasma proteomics using Olink, which provides a quantitative readout of cytokines, chemokines, and other immune factors,</p> </li> <li> <p>Cell frequency in PBMCs using flow cytometry,</p> </li> <li> <p>Tdap-specific antibodies levels</p> </li> </ul> <p><strong>B) List of tasks can be accessed using the “List of tasks for challenge 1.docx” file, and submissions need to submit in provided format here: “submission template challenge 1.tsv”</strong></p> <p><strong>C) Datasets for model building and making predictions:</strong></p> <p> Data files are divided into two categories: 1) raw dataset and 2) computable matrices.</p> <ol> <li> <p><strong>Raw dataset: </strong>This raw-most dataset is divided into training and test datasets. </p> </li> <li> <p><strong>Computable matrices: </strong>There are three different types of computable matrices. a) Full: These files are generated by dividing raw files into sub-files specific to planned days specific to vaccination. b) harmonized: These are generated by preserving only overlapping features between train and test datasets. b) imputed: MICE imputation is performed to impute missing values in the dataset.</p> </li> </ol> <p><strong>D) Submission evaluation</strong></p> <p>This folder contains all submitted models with ranking files and code for evaluating these models.</p> <p><strong>To learn more about the CMI-PB prediction challenge, visit our website at www.cmi-pb.org.</strong></p>
Corresponding spreadsheet to the Paper 'Comparative analysis of pre-Covid19 child immunization rates across 30 European countries and identification of underlying positive societal and system influences'
<p>This study provides a macro-level societal and health system focused analysis of child vaccination rates in 30 European countries, exploring the effect of context on coverage. The importance of demography and health system attributes on health care delivery are recognized in other fields, but generally overlooked in vaccination. The analysis is based on correlating systematic data built up by the Models of Child Health Appraised (MOCHA) Project with data from international sources, so as to exploit a one-off opportunity to set the analysis within an overall integrated study of primary care services for children, and the learning opportunities of the ‘natural European laboratory’. The descriptive analysis shows an overall persistent variation of coverage across vaccines with no specific vaccination having a low rate in all the EU and EEA countries. However, contrasting with this, variation between total uptake per vaccine across Europe suggests that the challenge of low rates is related to country contexts of either policy, delivery, or public perceptions. Econometric analysis aiming to explore whether some population, policy and/or health system characteristics may influence vaccination uptake provides important results - GDP per capita and the level of the population’s higher education engagement are positively linked with higher vaccination coverage, whereas mandatory vaccination policy is related to lower uptake rates. The health system characteristics that have a significant positive effect are a cohesive management structure; a high nurse/doctor ratio; and use of practical care delivery reinforcements such as the home-based record and the presence of child components of e‑health strategies.</p>
TGF-β neutralization attenuates tumor residency of activated T cells to enhance systemic immunity in mice
<p>Deep TCR sequencing was performed using the TCR Profiling Kit from MiLaboratories (Mouse α/β TCR RNA; Kit MiLaboratories; TMMR-001). Deep TCR sequencing was analyzed using the MiXCR software from MiLaboratories per manufacturer's recommendations. The files correspond to the TCR-beta sequences.<br>The files are named as follows:</p> <p> </p> <table> <tbody> <tr> <td>file_name</td> <td>cell type sequenced</td> <td>tissue of origin</td> <td>treatment</td> <td>mouse_id</td> </tr> <tr> <td>21BA1dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>bintrafusp alpha</td> <td>1</td> </tr> <tr> <td>23BA2dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>bintrafusp alpha</td> <td>2</td> </tr> <tr> <td>25BA3dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>bintrafusp alpha</td> <td>3</td> </tr> <tr> <td>27BA4dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>bintrafusp alpha</td> <td>4</td> </tr> <tr> <td>29BA5dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>bintrafusp alpha</td> <td>5</td> </tr> <tr> <td>22BA1SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>bintrafusp alpha</td> <td>1</td> </tr> <tr> <td>24BA2SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>bintrafusp alpha</td> <td>2</td> </tr> <tr> <td>26BA3SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>bintrafusp alpha</td> <td>3</td> </tr> <tr> <td>28BA4SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>bintrafusp alpha</td> <td>4</td> </tr> <tr> <td>30BA5SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>bintrafusp alpha</td> <td>5</td> </tr> <tr> <td>31CON1dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>control</td> <td>6</td> </tr> <tr> <td>33CON2dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>control</td> <td>7</td> </tr> <tr> <td>35CON3dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>control</td> <td>8</td> </tr> <tr> <td>37CON4dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>control</td> <td>9</td> </tr> <tr> <td>39CON5dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>control</td> <td>10</td> </tr> <tr> <td>32CON1SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>control</td> <td>6</td> </tr> <tr> <td>34CON2SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>control</td> <td>7</td> </tr> <tr> <td>36CON3SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>control</td> <td>8</td> </tr> <tr> <td>38CON4SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>control</td> <td>9</td> </tr> <tr> <td>40CON5SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>control</td> <td>10</td> </tr> <tr> <td>1aPDL11dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-PDL1 antibody</td> <td>11</td> </tr> <tr> <td>3aPDL12dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-PDL1 antibody</td> <td>12</td> </tr> <tr> <td>5aPDL13dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-PDL1 antibody</td> <td>13</td> </tr> <tr> <td>7aPDL14dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-PDL1 antibody</td> <td>14</td> </tr> <tr> <td>9aPDL15dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-PDL1 antibody</td> <td>15</td> </tr> <tr> <td>2aPDL11SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-PDL1 antibody</td> <td>11</td> </tr> <tr> <td>4aPDL12SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-PDL1 antibody</td> <td>12</td> </tr> <tr> <td>6aPDL13SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-PDL1 antibody</td> <td>13</td> </tr> <tr> <td>8aPDL14SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-PDL1 antibody</td> <td>14</td> </tr> <tr> <td>10aPDL15SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-PDL1 antibody</td> <td>15</td> </tr> <tr> <td>11aTGFB1dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-TGF-beta antibody</td> <td>16</td> </tr> <tr> <td>13aTGFB2dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-TGF-beta antibody</td> <td>17</td> </tr> <tr> <td>15aTGFB3dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-TGF-beta antibody</td> <td>18</td> </tr> <tr> <td>17aTGFB4dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-TGF-beta antibody</td> <td>19</td> </tr> <tr> <td>19aTGFB5dLN.clones_TRB.tsv</td> <td>T cells</td> <td>tumor-draining lymph node</td> <td>anti-TGF-beta antibody</td> <td>20</td> </tr> <tr> <td>12aTGFB1SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-TGF-beta antibody</td> <td>16</td> </tr> <tr> <td>14aTGFB2SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-TGF-beta antibody</td> <td>17</td> </tr> <tr> <td>16aTGFB3SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-TGF-beta antibody</td> <td>18</td> </tr> <tr> <td>18aTGFB4SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-TGF-beta antibody</td> <td>19</td> </tr> <tr> <td>20aTGFB5SP.clones_TRB.tsv</td> <td>T cells</td> <td>spleen</td> <td>anti-TGF-beta antibody</td> <td>20</td> </tr> </tbody> </table>
Leveraging diversity in computer-aided musical orchestration with an artificial immune system for multi-modal optimization
<p>Data resulting from the experiments described in "Leveraging diversity in computer-aided musical orchestration with an artificial immune system for multi-modal optimization" (https://doi.org/10.1016/j.swevo.2018.12.010). The contents of the files is the following:</p> <ul> <li>CAMO-AIS_SWEVO.zip: All of the data below in a single file</li> <li>CAMO_Iowa.zip: Audio and Data for the orchestrations with the Iowa sound database found at http://theremin.music.uiowa.edu/MIS.html</li> <li>CAMO_Phil.zip: Audio and Data for the orchestrations with the Philharmonia sound database found at https://www.philharmonia.co.uk/explore/sound_samples</li> <li>CAMO_RWC.zip: Audio and Data for the orchestrations with the RWC sound database found at https://staff.aist.go.jp/m.goto/RWC-MDB/rwc-mdb-i.html</li> <li>CAMO_SOL.zip: Audio and Data for the orchestrations with the Studio Online sound database available with Orchids http://forumnet.ircam.fr/product/orchids-en/</li> <li>Listening_Test.zip: Raw data (i.e., perceptual similarity ratings) from the listening test found at http://http://camo.inesctec.pt/. This data is anonymous (each participant is assigned a reference number) so the participants cannot be identified.</li> </ul> <p>See the README.txt file for a detailed description of the contents of each file.</p>
Not all roads lead to the immune system: The genetic basis of multiple sclerosis severity
<p>Multiple sclerosis is a leading cause of neurological disability in adults. Heterogeneity in multiple sclerosis clinical presentation has posed a major challenge for identifying genetic variants associated with disease outcomes. To overcome this challenge, we used prospectively ascertained clinical outcomes data from the largest international multiple sclerosis Registry, MSBase. We assembled a cohort of deeply phenotyped individuals of European ancestry with relapse-onset multiple sclerosis. We used unbiased genome-wide association study and machine learning approaches to assess the genetic contribution to longitudinally defined multiple sclerosis severity phenotypes in 1,813 individuals. Our primary analyses did not identify any genetic variants of moderate to large effect sizes that met genome-wide significance thresholds. The strongest signal was associated with rs7289446 (β=-0.4882, P = 2.73 × 10−7), intronic to SEZ6L on chromosome 22. However, we demonstrate that clinical outcomes in relapse-onset multiple sclerosis are associated with multiple genetic loci of small effect sizes. Using a machine learning approach incorporating over 62,000 variants together with clinical and demographic variables available at multiple sclerosis disease onset, we could predict severity with an area under the receiver operator curve of 0.84 (95% CI 0.79–0.88). Our machine learning algorithm achieved positive predictive value for outcome assignation of 80% and negative predictive value of 88%. This outperformed our machine learning algorithm that contained clinical and demographic variables alone (area under the receiver operator curve 0.54, 95% CI 0.48–0.60). Secondary, sex-stratified analyses identified two genetic loci that met genome-wide significance thresholds. One in females (rs10967273; βfemale =0.8289, P = 3.52 × 10<sup>-8</sup>), the other in males (rs698805; βmale = -1.5395, P = 4.35 × 10<sup>-8</sup>), providing some evidence for sex dimorphism in multiple sclerosis severity. Tissue enrichment and pathway analyses identified an overrepresentation of genes expressed in central nervous system compartments generally, and specifically in the cerebellum (P = 0.023). These involved mitochondrial function, synaptic plasticity, oligodendroglial biology, cellular senescence, calcium and g-protein receptor signalling pathways. We further identified six variants with strong evidence for regulating clinical outcomes, the strongest signal again intronic to SEZ6L (adjusted hazard ratio 0.72, P = 4.85 × 10<sup>-4</sup>). Here we report a milestone in our progress towards understanding the clinical heterogeneity of multiple sclerosis outcomes, implicating functionally distinct mechanisms to multiple sclerosis risk. Importantly, we demonstrate that machine learning using common single nucleotide variant clusters, together with clinical variables readily available at diagnosis can improve prognostic capabilities at diagnosis, and with further validation has the potential to translate to meaningful clinical practice change.</p>
Towards the generation of gnotobiotic larvae as a tool to investigate the influence of the microbiome on the development of the amphibian immune system
<div> <div> <div> <p>The immune equilibrium model suggests that exposure to microbes during early life primes immune responses for pathogen exposure later in life. While recent studies using a range of gnotobiotic (germ-free) model organisms offer support for this theory, we currently lack a tractable model system for investigating the influence of the microbiome on immune system development. Here, we used an amphibian species (<em>Xenopus laevis</em>) to investigate the importance of the microbiome in larval development and susceptibility to infectious disease later in life. We found that experimental reductions of the microbiome during embryonic and larval stages effectively reduced microbial richness, diversity, and altered community composition in tadpoles prior to metamorphosis. In addition, our antimicrobial treatments resulted in few negative effects on larval development, body condition, or survival to metamorphosis. However, contrary to our predictions, our antimicrobial treatments did not alter susceptibility to the lethal fungal pathogen <em>Batrachochytrium dendrobatidis</em> (<em>Bd</em>) in the adult life stage. While our treatments to reduce the microbiome during early development did not play a critical role in determining susceptibility to disease caused by <em>Bd</em> in <em>X</em>. <em>laevis</em>, they nevertheless indicate that developing a gnotobiotic amphibian model system may be highly useful for future immunological investigations.</p> </div> </div> </div>
Data from: 3-D deconvolution of human skin immune architecture with Multiplex Annotated Tissue Imaging System (MANTIS)
<p><span class="pre-line-wrapping ng-binding">Routine clinical assays, such as conventional immunohistochemistry, often fail to resolve the regional heterogeneity of complex inflammatory skin conditions. Here we introduce MANTIS (Multiplexed Annotated Tissue Imaging System), a flexible analytic pipeline compatible with routine practice, specifically designed for spatially-resolved immune phenotyping of the skin in experimental or clinical samples. Based on phenotype attribution matrices coupled to alpha-shape algorithms, MANTIS projects a representative digital immune landscape, while enabling automated detection of major inflammatory clusters and concomitant single-cell data quantification of biomarkers. We observed that severe pathological lesions from systemic lupus erythematosus, Kawasaki syndrome, or COVID-19-associated skin manifestations share common quantitative immune features, while displaying a non-random distribution of cells with the formation of disease-specific dermal immune structures. Given its accuracy and flexibility, MANTIS is designed to solve the spatial organization of complex immune environments to better apprehend the pathophysiology of skin manifestations.</span></p>
Data set related to the article: "The Role of BPIFB4 in Immune System and Cardiovascular Disease: The Lesson from Centenarians."
<p>Abstract:</p> <p>Recent discoveries have shed light on the participation of the immune system in the physio pathology of the car- diovascular system underpinning the importance of keeping the balance of the first to preserve the latter. Aging, along with other risk factors, can challenge such balance triggering the onset of cardiovascular diseases.</p> <p>Among several mediators ensuring the proper cross-talk between the two systems, bactericidal/permeability- increasing fold-containing family B member 4 (BPIFB4) has been shown to have a pivotal role, also by sustaining important signals such as eNOS and PKC-alpha.</p> <p>In addition, the Longevity-associated variant (LAV), which is an haplotype allele in BPIFB4 characterized by 4 missense polymorphisms, enriched in homozygosity in Long Living Individuals (LLIs), has been shown to be efficient, if admin- istered systemically through gene therapy, in improving many aspects of cardiovascular diseases (CVDs). This occurs mainly through a fine immune system remodeling across: 1) a M2 macrophage polarizing effect, 2) a favorable redistri- bution of the circulating monocyte cell subsets and 3) the reduction of T-cell activation. Furthermore, LAV-BPIFB4 treat- ment induced a desirable recovery of the inflammatory balance by mitigating the pro-inflammatory factor levels and enhancing the anti-inflammatory boost through a mechanism that is partially dependent on SDF-1/CXCR4 axis.</p> <p>Importantly, the remarkable effects of LAV-BPIFB4 treatment, which translates in increased BPIFB4 circulating levels, mirror what occurs in long-living individuals (LLIs) in whom the high circulating levels of BPIFB4 are protective from age-related and CVDs and emphasize the reason why LLIs are considered a model of successful aging. Here, we review the mechanisms by which LAV-BPIFB4 exerts its immunomodulatory activity in improving the cardiovascular-immune system dialogue that might strengthen its role as a key mediator in CVDs.</p>
Increased pupal temperature has reversible effects on thermal performance and irreversible effects on immune system and fecundity in adult ladybirds
<p><span>The environmental conditions an organism encounters during development vary in their lasting impact on adult phenotypes</span><span>. </span><span>In the context of ongoing climate change, it is particularly relevant to understand how high developmental temperatures can impact adult traits, and whether these effects persist or diminish during adulthood. </span><span>Here, we assessed the effects of pupal temperature (17°C – normal temperature, 26°C – increased temperature, or 35°C – heat wave) on adult <em>Harmonia</em> <em>axyridis</em> thermal stress tolerance, immune function, starvation resistance, and fecundity. </span><span>Temperature during pupation significantly affected all investigated traits in fresh adults. Heat acclimation decreased adult haemocyte concentration, cold tolerance, and total egg production, and had a positive effect on heat tolerance and starvation resistance. The negative effects of heat acclimation on cold tolerance diminished after seven days. In contrast, heat acclimation had a lasting positive effect on adult heat tolerance. Our results provide a broad assessment of the effects of developmental thermal acclimation on <em>H</em>. <em>axyridis</em> adult phenotypes. The relative plasticity of several adult traits after thermal acclimation may be consequential for the future geographic distribution and local performance of various insect species.</span></p>
Chemotherapy and Unrelated Donor Stem Cell Transplantation for Patients With Cancers of the Blood and Immune System
ClinicalTrials.gov study NCT00520130. IPD Sharing: NO. Countries: 1. Publications: 6.
Comparing Immune System Suppression to Medication for Unexplained Heart Function and Irregular Heartbeat
ClinicalTrials.gov study NCT06635863. IPD Sharing: YES. Countries: 1. Publications: 18.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.