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63 results for “In situ Analysis”
Criteria for prioritizing selection of Mexican maize landrace accessions for conservation in situ or ex situ based on phylogenetic analysis
<p>Data for processed SSR markers in maize accessions. A database in Structured Query Language (SQL) is provided. Please see the text file "READMEmaizeSSR.pdf".</p>
Tabular datasets for "In situ structural analysis reveals membrane shape transitions during autophagosome formation"
<p>Tabular source data for all plots in the manuscript "In situ structural analysis reveals membrane shape transitions during autophagosome formation". The article is available at https://doi.org/10.1101/2022.05.02.490291. The naming of the sheets in the .xlsx files corresponds to the figure number and panel.</p>
Supplementary Material for "A comparative high-resolution spectroscopic analysis of in situ and accreted globular clusters"
<p>This is a file containing supplementary material for the paper <em>A comparative high-resolution spectroscopic analysis of in situ and accreted globular clusters.</em> For each star in target globular clusters, it lists crucial information on the linelist analyzed. In particular:</p> <ol> <li>Star ID.</li> <li>Chemical element.</li> <li>Wavelength.</li> <li>log <em>gf</em></li> <li>Excitation potential.</li> <li>Measured equivalent width with uncertaintiy.</li> </ol>
Neural Network and objective analysis reconstruction of 3D Mediterranean physical fields from surface satellite and in situ observations at 1/24 deg
<p>Daily Mediterranean 3D fields of temperature, salinity and geostrophic current at 1/24° of resolution, up to 150m-depth and from 2016 to mid 2022, obtained through a 3 steps approach: (1) Temperature and salinity 3D fields have been first estimated by a machine learning approach by using mediterranean reanalysis outputs (https://doi.org/10.25423/CMCC/MEDSEA_MULTIYEAR_PHY_006_004_E3R) together with satellite observations, (2) a combination of this first step with in situ observations through an Optimal interpolation to remove part of large scale biases, (3) the computation of geostrophic currents using the thermal wind equation. This work has been funded by the European Space Agency through the 4DMED-SEA project [ESA contract No. 4000141547/23/I-DT].</p>
Experimental data related to the publication: "In-situ analysis of the effect of residual fcc phase and special grain boundaries on the deformation dynamics in pure cobalt"
<p>The article figures were produced solely from these data sets employing data processing methods described therein. For experimental conditions and naming conventions please refer to the paper.</p> <p><br>1. Deformation data files contained within "deformation_data.zip":</p> <p>The .zip archive contains five files related to five samples of thermally treated cobalt:<br>def_co600.csv<br>def_co800.csv<br>def_co1100.csv<br>def_co1100-10c.csv<br>def_co1100-20c.csv</p> <p>The data were recorded during compression of the above-listed samples at room temperature. </p> <p><br>2. Acoustic emission (AE) data files contained within "AE_data.zip":</p> <p>The .zip archive contains four files related to four samples of thermally treated cobalt:<br>AE_co600.wav<br>AE_co800.wav<br>AE_co1100.wav<br>AE_co1100-20c.wav</p> <p>The AE data were recorded in continuous mode ("data streaming" at 2 MHz) during compression of the above-listed samples at room temperature. </p> <p> </p> <p>3. Electron back-scatter diffraction (EBSD) data files contained within "EBSD_data.zip":</p> <p>The .zip archive contains fifty-three .osc files related to samples of as-drawn and thermally treated cobalt within four folders:<br>0c - as-drawn and annealed samples (i.e. without thermal cycling)<br>10c - annealed samples after thermal cycling of 10 cycles<br>20c - annealed samples after thermal cycling of 20 cycles<br>ex-situ_def - ex-situ EBSD during deformation of selected samples</p> <p>The .osc data files represent EBSD data after clean-up procedures described in detail in the manuscript.</p> <p> </p> <p> </p> <p> </p>
Metagenomic analysis suggests low in situ replication rates for dust-associated bacteria over the Red Sea
<p>Gff and fasta files of dust-associated MAGs that were analyzed on GRiD for estimation of in situ replication rates</p>
FIGURE 2 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 2. Reconstructed tomographic images of the specimen (1) and its internal structure in median section (2). The lower and upper jaws are enlarged in (3) and (4), respectively.
FIGURE 5 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 5. Three-dimensional reconstruction of the upper and lower jaws preserved in the body chamber of the specimen. The reconstructed parts are inside the specimen (1). The jaws are preserved close to each other (2).
FIGURE 1 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 1. Left lateral (1), dorsal (2) and ventral (3) views of Phyllopachyceras ezoensis with preserved upper and lower jaws in situ within the body chamber. UMUT MM 27831 (modified from Tanabe et al., 2013).
FIGURE 7 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 7. Result of segmentation of the upper jaw of the specimen, from frontal (1), rear (2), left-lateral (3) views and the transverse section of the area (4) indicated as a square in (3). The three-dimensional reconstruction (5) shows areal distributions of the "chitinous" lamellae and the calcareous covering. The reconstruction of the transverse section (6), which corresponds to (4), shows the architecture of the outer lamella. The abbreviations are indicated in (5).
FIGURE 6 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 6. Result of segmentation of the lower jaw of the specimen, from lateral view which is restricted to its anterior and posterior portion (1). Three-dimensional reconstruction (2) suggests a wide distribution of calcareous material. The outer calcareous layer on the outer "chitinous" layer is partly taken off in (2). The transverse section of the area indicated as a square in (1) shows that the calcareous covering of the lower jaw also covers the internal surface of the "chitinous" lamella (3). The abbreviation is indicated in (2).
FIGURE 4 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 4. Linear absorption coefficient (LAC) of the internal portions of the specimen estimated by their mean luminance values in the tomographic images. The numbers (1)-(10) correspond to the materials in Table 1. The dashed lines indicate the known values for the materials (Chantler et al., 2005) that could be expected to be observed in the specimen. Note that glycine is the most dominant amino acid in jaws of Octopus vulgaris (Hunt and Nixon, 1981). The relationship between LAC values and luminance values is based on the assumption that the LAC values for the surrounding air are zero and that the crystals precipitated in the phragmocone are calcite.
FIGURE 3 in Non-destructive analysis of in situ ammonoid jaws by synchrotron radiation X-ray micro-computed tomography
FIGURE 3. Serial cross-sections of the body chamber portion of the specimen cut from the venter (1) to the dorsum (4), in which sectioned images of the upper jaw are shown. Note that the vertical stripes are due to the separated scanning.
Data Workbook - Ex-Situ Geoheritage Case Study: Quantitative and Qualitative Analysis of the Uppsala University Museum of Evolution Collections
<p>Data Workbook for Thesis.</p> <p>Ex-Situ Geoheritage Case Study: Quantitative and Qualitative Analysis of the Uppsala University Museum of Evolution Collections. </p> <p>Includes; Images, Conservation Results, Inventory, Valuation Grades, RStudio Results</p>
Text-fig. 27. Scanning electron microscope (SEM) images of monocolpate pollen grains of Goczania rugosa gen. et sp. nov. in situ in dithecate, tetrasporangiate stamens; Torres Vedras locality, Portugal. a, b) Stamens in apical view (holotype a) showing the paired pollen sacs; c) Pollen grain from stamen fragment in (b) showing short aperture and rugulate-microechinate surface; d–f) Pollen grains from stamen fragment in (a) showing a folded distal aperture and rugulate-microechinate surface; note the orbicules of different sizes. Specimens, TV44-S136688 (holotype; a, c–f), TV44-S136664 (b). Scale bars 300 Μm (a,b), 6 Μm (c–e), 3 Μm (f). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 27. Scanning electron microscope (SEM) images of monocolpate pollen grains of Goczania rugosa gen. et sp. nov. in situ in dithecate, tetrasporangiate stamens; Torres Vedras locality, Portugal. a, b) Stamens in apical view (holotype a) showing the paired pollen sacs; c) Pollen grain from stamen fragment in (b) showing short aperture and rugulate-microechinate surface; d–f) Pollen grains from stamen fragment in (a) showing a folded distal aperture and rugulate-microechinate surface; note the orbicules of different sizes. Specimens, TV44-S136688 (holotype; a, c–f), TV44-S136664 (b). Scale bars 300 Μm (a,b), 6 Μm (c–e), 3 Μm (f).
Text-fig. 22. Scanning electron microscope (SEM) images of fragmentary stamens (a, b) with in situ pollen of Clavatipollenites sp. 1 (c–g); Torres Vedras locality, Portugal. a, b) Fragmentary tetrasporangiate stamens; c–e) Distal view of pollen grains showing large, rounded aperture and the irregular verrucate aperture membrane; f) Proximal view of pollen grains showing dense reticulum; g) Section through the fractured pollen wall showing foot layer, columellae and muri with faint supratectal ornamentation. Specimens, TV44-S105013 (a, c, d), TV44-S105019 (b, e–g). Scale bars 300 Μm (a, b), 6 Μm (c–f), 3 Μm (g). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 22. Scanning electron microscope (SEM) images of fragmentary stamens (a, b) with in situ pollen of Clavatipollenites sp. 1 (c–g); Torres Vedras locality, Portugal. a, b) Fragmentary tetrasporangiate stamens; c–e) Distal view of pollen grains showing large, rounded aperture and the irregular verrucate aperture membrane; f) Proximal view of pollen grains showing dense reticulum; g) Section through the fractured pollen wall showing foot layer, columellae and muri with faint supratectal ornamentation. Specimens, TV44-S105013 (a, c, d), TV44-S105019 (b, e–g). Scale bars 300 Μm (a, b), 6 Μm (c–f), 3 Μm (g).
Text-fig. 20. Scanning electron microscope (SEM) images of fruits of Hedyflora (a–d), stamen with in situ Asteropollis sp. pollen (e–g), and Hedyosmum-like staminate inflorescence (h); Torres Vedras locality, Portugal. a, b) Hedyflora sp. 1, lateral and apical views of fruits showing the triangular cross-section, remains of three tepals, apical style and the three lateral "windows" in the hypanthium; c, d) Hedyflora sp. 2, lateral views of fruits showing three well-preserved tepals, apical style and the lateral "windows" in the hypanthium; note the papillae on the lateral wall and around the base of the style; e, f, g) Stamen (f) with in situ pollen of Asteropollis sp. showing the poorly defined star-shaped apertural area (e) and reticulate tectum, with the muri ornamented by small verrucae (g); h) Hedyosmum-like staminate inflorescence with five whorls of tetrasporangiate stamens. Specimens, TV43-S101749 (a, b), TV43-S101307 (c, d), TV44-S137917 (e–g), TV39-S101220 (h). Scale bars 300 Μm (a–d, f, h), 6 Μm (e), 1.5 Μm (g). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 20. Scanning electron microscope (SEM) images of fruits of Hedyflora (a–d), stamen with in situ Asteropollis sp. pollen (e–g), and Hedyosmum-like staminate inflorescence (h); Torres Vedras locality, Portugal. a, b) Hedyflora sp. 1, lateral and apical views of fruits showing the triangular cross-section, remains of three tepals, apical style and the three lateral "windows" in the hypanthium; c, d) Hedyflora sp. 2, lateral views of fruits showing three well-preserved tepals, apical style and the lateral "windows" in the hypanthium; note the papillae on the lateral wall and around the base of the style; e, f, g) Stamen (f) with in situ pollen of Asteropollis sp. showing the poorly defined star-shaped apertural area (e) and reticulate tectum, with the muri ornamented by small verrucae (g); h) Hedyosmum-like staminate inflorescence with five whorls of tetrasporangiate stamens. Specimens, TV43-S101749 (a, b), TV43-S101307 (c, d), TV44-S137917 (e–g), TV39-S101220 (h). Scale bars 300 Μm (a–d, f, h), 6 Μm (e), 1.5 Μm (g).
Text-fig. 21. Scanning electron microscope (SEM) images of stamens (a–c) with in situ trichotomocolpate Asteropollis type pollen (d– h); Torres Vedras locality, Portugal. a) Fragmentary tetrasporangiate stamen; b) Group of tetrasporangiate stamens; c) Single pollen sac from stamen; d, f) Distal view of pollen grains showing trichotomocolpate aperture; e, g) Pollen wall showing dense reticulum with faint supratectal ornamentation; h) Detail of pollen wall showing numerous long columellae. Specimens, TV44-S105012 (a, d), TV44-105015 (b, e), TV44-S136763 (c, f, g), TV44- S136669 (h). Scale bars 300 Μm (a–c), 6 Μm (d, f), 1.5 Μm (e, g, h). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 21. Scanning electron microscope (SEM) images of stamens (a–c) with in situ trichotomocolpate Asteropollis type pollen (d– h); Torres Vedras locality, Portugal. a) Fragmentary tetrasporangiate stamen; b) Group of tetrasporangiate stamens; c) Single pollen sac from stamen; d, f) Distal view of pollen grains showing trichotomocolpate aperture; e, g) Pollen wall showing dense reticulum with faint supratectal ornamentation; h) Detail of pollen wall showing numerous long columellae. Specimens, TV44-S105012 (a, d), TV44-105015 (b, e), TV44-S136763 (c, f, g), TV44- S136669 (h). Scale bars 300 Μm (a–c), 6 Μm (d, f), 1.5 Μm (e, g, h).
Text-fig. 23. Scanning electron microscope (SEM) images of Clavatipollenites sp. 2 (a–c) from a fragmentary stamen, and stamen fragments with in situ pollen of Clavatipollenites sp. 3 (d–j); Torres Vedras locality, Portugal. a, b) Distal (a) and proximal (b) view of pollen showing simple, elongate colpus on distal surface and semitectate-reticulate pollen wall; c) Detail of pollen wall showing muri with finely verrucate supratectal ornamentation and long scattered columellae; d) Fragment of tetrasporangiate stamen; e, f) Distal views of pollen from stamen fragment showing poorly defined aperture, coarse reticulum and long scattered columellae; g) Fragment of stamen; h) Distal view of pollen showing poorly defined aperture covered by irregular verrucae; i, j) Pollen wall showing rounded orbicules (i) and fractured pollen wall showing long scattered columellae (j). Specimens, TV43-S136728 (a–c), TV44-S149201 (d–f), TV44-S149220 (g–j). Scale bars 300 Μm (d, g), 6 Μm (a, b, e, f, h), 3 Μm (c), 1.5 Μm (i, j). in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 23. Scanning electron microscope (SEM) images of Clavatipollenites sp. 2 (a–c) from a fragmentary stamen, and stamen fragments with in situ pollen of Clavatipollenites sp. 3 (d–j); Torres Vedras locality, Portugal. a, b) Distal (a) and proximal (b) view of pollen showing simple, elongate colpus on distal surface and semitectate-reticulate pollen wall; c) Detail of pollen wall showing muri with finely verrucate supratectal ornamentation and long scattered columellae; d) Fragment of tetrasporangiate stamen; e, f) Distal views of pollen from stamen fragment showing poorly defined aperture, coarse reticulum and long scattered columellae; g) Fragment of stamen; h) Distal view of pollen showing poorly defined aperture covered by irregular verrucae; i, j) Pollen wall showing rounded orbicules (i) and fractured pollen wall showing long scattered columellae (j). Specimens, TV43-S136728 (a–c), TV44-S149201 (d–f), TV44-S149220 (g–j). Scale bars 300 Μm (d, g), 6 Μm (a, b, e, f, h), 3 Μm (c), 1.5 Μm (i, j).
Text-fig. 7. Scanning electron microscope (SEM) images of spores with possible affinities to lycopodiopsids (a–c) and Schizaeaceae (d–g); Torres Vedras locality, Portugal. a) Densoisporites sp. from a clump of spores in proximal (left) and partial distal views (right) showing the narrow equatorial flange, long laesurae, and reticulum that is coarser on the distal surface than on the proximal surface; b, c) Unnamed microspores from clump of microspores in proximal (b) and distal (c) views showing finely reticulate surface; d, e) Cicatricosisporites ventusus fertile pinnules showing numerous attached sporangia (d) each with terminal annulus (arrowheads) and spores in situ (e); f) Cicatricosisporites sp. 1 spores from fertile pinnules bearing sporangia with a terminal in The Early Cretaceous Mesofossil Flora Of Torres Vedras (Ne Of Forte Da Forca), Portugal: A Palaeofloristic Analysis Of An Early Angiosperm Community
Text-fig. 7. Scanning electron microscope (SEM) images of spores with possible affinities to lycopodiopsids (a–c) and Schizaeaceae (d–g); Torres Vedras locality, Portugal. a) Densoisporites sp. from a clump of spores in proximal (left) and partial distal views (right) showing the narrow equatorial flange, long laesurae, and reticulum that is coarser on the distal surface than on the proximal surface; b, c) Unnamed microspores from clump of microspores in proximal (b) and distal (c) views showing finely reticulate surface; d, e) Cicatricosisporites ventusus fertile pinnules showing numerous attached sporangia (d) each with terminal annulus (arrowheads) and spores in situ (e); f) Cicatricosisporites sp. 1 spores from fertile pinnules bearing sporangia with a terminal
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.