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8 results for “Index Fungorum”
Making The Taxonomic Effort: Data on Index Fungorum and IPNI new species and new combinations author gender
<p>Data on plant and fungal names and new combinations extracted in 2018 from the International Plant Names Index (IPNI) and Index Fungorum (IF) on names published from 1931 onwards. The gender of the authors of the names and combinations have been assigned from another data set on Zenodo here:</p> <p><strong>Lindon, Heather, Gardiner, Lauren, Vorontsova, Maria, & Brady, Abigail. (2020). Gendered Author List International Plant Names Index 2020 (Version 2) [Data set]. Zenodo. <a href="https://doi.org/10.5281/zenodo.3911077">https://doi.org/10.5281/zenodo.3911077</a></strong></p> <p>The set of data here was used for an analysis of names and new combinations published by women for a paper in the Linnean Society entitled 'Making the Taxonomic Effort' Published April 2023 https://www.linnean.org/our-publications.</p>
Index Fungorum persistent identifiers for taxonomic names and publications
<p>Linked data for taxonomic names in Index Fungorum linked to publications of those names. Triples use terms from http://schema.org vocabulary, fungal names identified by Life Science Identifiers, publications identified with DOIs.</p>
Supplementary material 2 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
IPNI response XML : Explanation note: XML response of IPNI to the query in Suppl. material 1. The response is sent back to Pensoft and contains the registration numbers of the new genus name and the new combination [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 4 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
TaxPub response XML : Explanation note: TaxPub XML returned from ZooBank to Pensoft containing UUIDs of the article, authors and new taxon names [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of IPNI : Explanation note: XML query sent from Pensoft to IPNI on the day of acceptance of the manuscript for publication [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 3 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of TaxPub : Explanation note: TaxPub XML of a ready-to-publish manuscript submitted from Pensoft to ZooBank [exemplified with the paper of Morffe and Rodríguez (2013)].
Index Fungorum
<p>The Index Fungorum, the global fungal nomenclator coordinated and supported by the Index Fungorum Partnership, contains names of fungi (including yeasts, lichens, chromistan fungi, protozoan fungi and fossil forms) at species level and below. Funding from GBIF (2003-2004) under the ECAT work programme enabled the addition of most missing author citations and year of publication and the linking of most homotypic names. New names from the Index of Fungi, compiled at CABI-UK and published by CABI, are added every three months. The Bibliography of Systematic Mycology provides a survey of the literature encompassing the biodiversity, classification, distribution, evolution, identification, nomenclature, phylogeny, systematics and taxonomy of fungi (as defined in the previous paragraph). You can search the database using the index of cited generic names or author names. The Dictionary of the Fungi (currently 10th edition, 2008) published by CABI also contains the current consensus on the fungal taxonomic hierarchy to the rank of genus. Here you can search the database for the status of generic names, or walk down the hierarchy from the rank of Kingdom. The entries for each genus generally include authors and place of publication together with the type species (linked to Index Fungorum) and other data. A database of family names which includes authors, place of publication and type genus (linked to the Dictionary of the Fungi hierarchy) is now supplemented by one which contains names at all supra-familial ranks although it is far from completion. CABI Bioscience is presently coordinating the fungal component of the Species 2000 project and its contribution, in partnership with ITIS, to the Catalogue of Life (currently used in the GBIF portal); for more information regarding this global initiative visit their website. You may search here a small but growing number of taxonomically complete datasets - global species databases. Please contact Paul Kirk if you you would like to contribute. All these databases need to be improved and updated in terms of data content. Please contact Paul Kirk if you have any additions or suggested changes (which will be acknowledged). The database structures have been developed by Jerry Cooper and Paul Kirk and the web interface by Jerry Cooper. Please contact Jerry Cooper if you have any problems with pages or database searches.</p>
Figure 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
Figure 1 - Automated registration process and validation of finally published data and metadata between publisher and registry. Abbreviation on logos: IPNI - International Plant Name Index, IF - Index Fungorum.
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