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47 results for “Infinium BeadChip”
High density SNP genotypes (Infinium Human CytoSNP-850K v1.2 BeadChip) of ERAP2-WT and ERAP2-KO Birdshot LCL
<p>SNP genotype data was performed on DNA isolated from WT and CRISPR-Cas9 edited LCLs (ERAP2-KO) according to standard procedures using the Infinium Human CytoSNP-850K v1.2 BeadChip (Illumina, San Diego, CA, USA). SNP-array results and data analysis were carried out using NxClinical software v5.1 (BioDiscovery, Los Angeles, CA, USA). Human genome build Feb. 2009 GRCh37/hg19 was used. </p>
The impact of low input DNA on the reliability of DNA methylation as measured by the Illumina Infinium MethylationEPIC BeadChip, supplementary table 3
<p>Supplementary table 3: Summary statistics from an EWAS assessing the relationship between variance in DNA methylation value and DNA input level.</p>
Data from: Genomic analysis of morphometric traits in bighorn sheep using the Ovine Infinium® HD SNP BeadChip
Elucidating the genetic basis of fitness-related traits is a major goal of molecular ecology. Traits subject to sexual selection are particularly interesting, as non-random mate choice should deplete genetic variation and thereby their evolutionary benefits. We examined the genetic basis of three sexually selected morphometric traits in bighorn sheep (Ovis canadensis): horn length, horn base circumference, and body mass. These traits are of specific concern in bighorn sheep as artificial selection through trophy hunting opposes sexual selection. Specifically, horn size determines trophy status and, in most North American jurisdictions, if an individual can be legally harvested. Using between 7,994–9,552 phenotypic measures from the long-term individual-based study at Ram Mountain (Alberta, Canada), we first showed that all three traits are heritable (h2 = 0.15–0.23). We then conducted a genome-wide association study (GWAS) utilizing a set of 3,777 SNPs typed in 76 individuals using the Ovine Infinium® HD SNP BeadChip. We found suggestive association for body mass at a single locus (OAR9_91647990). The absence of strong associations with SNPs suggests that the traits are likely polygenic. These results represent a step forward for characterizing the genetic architecture of fitness related traits in sexually dimorphic ungulates.
Data from: Genomic analysis of morphometric traits in bighorn sheep using the Ovine Infinium® HD SNP BeadChip
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Methylation data from nine tissues from GTEx samples profiled with Infinium HumanMethylationEPIC BeadChip
GEO Series GSE213478. Homo sapiens. 987 samples. Type: Methylation profiling by array.
Genotyping analysis employing Illumina Infinium ImmunoArray-24 v2.0 BeadChip
GEO Series GSE105120. Homo sapiens. 170 samples. Type: Genome variation profiling by SNP array.
Illumina Infinium MethylationEPIC BeadChip (850k) data of germ cell tumor-related somatic-type maligancies
GEO Series GSE219033. Homo sapiens. 20 samples. Type: Methylation profiling by array.
Evaluating The Infinium Human MethylationEPIC v2 BeadChip
GEO Series GSE228820. Homo sapiens. 56 samples. Type: Methylation profiling by genome tiling array.
Optimizing the experimental and computational methods for Infinium DNA methylation BeadChip on low input and single cells
GEO Series GSE239290. Mus musculus. 146 samples. Type: Methylation profiling by genome tiling array.
Wide methylation analysis in vestibular schwannoma [Infinium HumanMethylation450 BeadChip]
GEO Series GSE56596. Homo sapiens. 45 samples. Type: Methylation profiling by genome tiling array.
Formalin-fixed, paraffin-embedded (FFPE) tissue epigenomics using Infinium HumanMethylation450 BeadChip assays (HM 450K).
GEO Series GSE66555. Homo sapiens. 65 samples. Type: Methylation profiling by array.
Genotyping of Infinium OmniZhongHua BeadChip from Illumina for haplotype construction
GEO Series GSE148708. Homo sapiens. 8 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Structural genomic variation analysis in patients with bone marrow failure using Illumina Infinium SNP Arrays [Illumina Quad610 Beadchip]
GEO Series GSE48483. Homo sapiens. 67 samples. Type: SNP genotyping by SNP array.
Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
GEO Series GSE42409. Homo sapiens. 12 samples. Type: Methylation profiling by array.
Genome-wide methylation analysis of esophageal squamous cell carcinoma using Infinium HumanMethylation 450 BeadChip
GEO Series GSE74693. Homo sapiens. 10 samples. Type: Methylation profiling by array.
Genome-wide methylation analysis of cancer-associated fibroblasts using Infinium HumanMethylation 450 BeadChip
GEO Series GSE117087. Homo sapiens. 24 samples. Type: Methylation profiling by array.
Genome-wide methylation analysis of ependymoma using Infinium HumanMethylation 450 BeadChip
GEO Series GSE114523. Homo sapiens. 83 samples. Type: Methylation profiling by genome tiling array.
Clonal Selection Drives Genetic Divergence of Metastatic Medulloblastoma [Illumina Infinium HumanMethylation27 Beadchip v1.2]
GEO Series GSE34355. Homo sapiens. 19 samples. Type: Methylation profiling by array.
Genome-wide methylation analysis of esophageal mucosa using Infinium HumanMethylation 450 BeadChip
GEO Series GSE77991. Homo sapiens. 37 samples. Type: Methylation profiling by genome tiling array.
Human Prostate Cancer Illumina Infinium Human Methylation450 (HM450K bead array) BeadChip samples (benign vs tumor)
GEO Series GSE47915. Homo sapiens. 8 samples. Type: Methylation profiling by array.
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OpenNeuro
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