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135 results for “Isolation by resistance”
Data set for publication: Determination of Virulence-Associated Genes and Antimicrobial Resistance Profiles in Brucella Isolates Recovered from Humans and Animals in Iran Using NGS Technology
<p>This dataset includes information on resistance profiling, as well as antimicrobial resistance (AMR) genes and virulence-related factors that were identified in <em>Brucella</em> isolates recovered from humans and animals in different regions of Iran using classical phenotyping and next-generation sequencing (NGS) technology.</p>
PubMLST allele profiles and sequence alignments of 382 carbapenem-resistant Pseudomonas aeruginosa isolates collected from Japanese hospitals in 2019-2020
<p>This dataset provides PubMLST allele profiles, sequence alignments, and Mash distance data used in the study of "Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan". </p>
Genome assemblies of 382 carbapenem-resistant Pseudomonas aeruginosa isolates collected from Japanese hospitals in 2019−2020
<p>This dataset provides genome assemblies used in the study of "Nationwide genome surveillance of carbapenem-resistant Pseudomonas aeruginosa in Japan".</p> <p> </p>
Insertion sequences and other mobile elements associated with antibiotic resistance genes in Enterococcus isolates from an inpatient with prolonged bacteremia.
<p>Insertion sequences (ISs) and other transposable elements are associated with the mobilization of antibiotic resistance determinants and the modulation of pathogenic characteristics. In this work, we aimed to investigate the association between ISs and antibiotic resistance genes, and their role in dissemination and modification of the antibiotic resistant phenotype. To that end, we leveraged fully resolved <em>Enterococcus faecium</em> and <em>Enterococcus faecalis</em> genomes of isolates collected over five days from an inpatient with prolonged bacteremia. Isolates from both species harbored similar IS family content but showed significant species-dependent differences in copy number and arrangements of ISs throughout their replicons. Here, we describe two inter-specific IS-mediated recombination events and IS-mediated excision events in plasmids of <em>E. faecium</em> isolates. We also characterize a novel arrangement of the ISs in a Tn1546-like transposon in <em>E. faecalis</em> isolates likely implicated in a vancomycin genotype-phenotype discrepancy. Furthermore, an extended analysis revealed a novel association between daptomycin resistance mutations in <em>liaSR</em> genes and a putative composite transposon in<em> E. faecium</em>, offering a new paradigm for the study of daptomycin resistance and novel insights into the dissemination of daptomycin resistance. In conclusion, our study highlights the role ISs and other transposable elements play in the rapid adaptation and response to clinically relevant stresses such as aggressive antibiotic treatment in enterococci.</p>
Alterations of antimicrobial resistance genes in the clinical multi-drug resistance Acinetobacter baumannii isolates in Vietnam
<p><strong>FIGURE 1 </strong>List of antibiotic resistance gene expression.</p> <p><strong>TABLE 1 </strong>Primers used in this study.</p> <p><strong>TABLE 2 </strong>Clinical characteristics of 30 patients with <em>A. baumannii </em>isolates.</p> <p><strong>TABLE 3 </strong>Antimicrobial resistance values of <em>A. baumannii</em> isolated during 2017 to 2019 year in the Military Hospital 103.</p> <p><strong>TABLE 4 </strong>Relationship between genotype and phenotype antimicrobial resistance of isolates in this study.</p> <p><strong>TABLE 5 </strong>List of altered antibiotic resistance genes expression in isolates of <em>A. baumannii</em> (up or down two-fold changes of related genes compare with <em>16S rRNA</em> gene).</p> <p><strong>TABLE 6 </strong>The multiple antimicrobial resistance gene profile of 30 <em>A. baumannii</em> isolates.</p> <p> </p>
Figure 1 in Antimicrobial resistance profile of Aeromonas spp. isolated from asymptomatic Colossoma macropomum cultured in the Amazonas State, Brazil
Figure 1. Records of Aeromonas spp. isolated from tambaqui (Colossoma macropomum) by fish farms in the rainy season (bars with stripes) and the dry season (bars with dots).
Figure 2 in Phenotypic and molecular characterization of fluoroquinolone resistant Pseudomonas aeruginosa isolates in Palestine
Figure 2. Median-joining network of GyrA (A), ParC (B) and ParE (C) of the haplotypes of fluoroquinolone resistant P. aeruginosa isolates. Each haplotype is represented by a circle. The asterisk (*) denotes the founder haplotype. The size of circle is relative to haplotype frequency. Bars indicate the number of nucleotide substitutions for GyrA (A), ParC (B) and ParE (C) sequences from fluoroquinolone resistant P. aeruginosa isolates recovered in Palestine.
Figure 3 in Phenotypic and molecular characterization of fluoroquinolone resistant Pseudomonas aeruginosa isolates in Palestine
Figure 3. Nucleotide variation positions of GyrA (A), ParC (B) and ParE (C) genes among the studied fluoroquinolone resistant P. aeruginosa isolates according to the references from GenBank. Parsimony informative sites are shaded in light grey, while InDels are shaded in dark gray.
Figure 1 in Phenotypic and molecular characterization of fluoroquinolone resistant Pseudomonas aeruginosa isolates in Palestine
Figure 1. Molecular phylogenetic analysis by Maximum Likelihood method based on the GyrA (A), ParC (B) and ParE (C) sequence from fluoroquinolone resistant P. aeruginosa isolated in Palestine. Reference sequences retrieved from Genbank for the GyrA (A), ParC (B) and ParE (C) genes were denoted by asterisks (*). Sequences from Palestine and reference sequences were used to construct the phylogenetic tree. Evolutionary analyses were conducted in MEGA6.
Fig. 10 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 10. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Paenibacillaceae. Strain: BT73. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 8 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 8. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Deinococcaceae. Strain: BT95. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 9 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 9. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Bacillaceae. Strain: BT94, BT96. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 7 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 7. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Hymenobacteraceae. Strain: BT99. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 6 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 6. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Cytophagaceae. Strain: BT100. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 4 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Micrococcaceae. Strains: BT53 and BT92. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 5 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 5. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Nocardioidaceae. Strains: BT84. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 3 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Microbacteriaceae. Strains: BT109, BT97, BT98, BT102, BT89, BT119 and BT82. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 2 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolated in this study and their relatives of the family Nocardiaceae. Strain: BT115, BT120. Bootstrap values (>80%) are shown above nodes for the neighbor-joining methods. Bar: 0.01 substitutions per nucleotide position.
Fig. 1 in Eighteen unreported radiation-resistant bacterial species isolated from Korea in 2018
Fig. 1. Transmission electron micrographs of the strains isolated in this study. Strains: 1, BT100; 2, BT53; 3, BT92; 4, BT109; 5, BT97; 6, BT82; 7, BT94; 8, BT84; 9, BT95; 10, BT96; 11, BT98; 12, BT99; 13, BT115; 14, BT119; 15, BT73; 16, BT120; 17, BT102; 18, BT89.
Fig. 11 in Twelve unrecorded UV-resistant bacterial species isolated in 2020
Fig. 11. UV resistance graph of the strains isolated in this study. Survival rates of D. radiodurans R1T (), strains () and E. coli K12 () ■ ● ◆ are also shown. Strains: a, BT578; b, BT579; c, BT623; d, BT581; e, BT582; f, BT474; g, BT580; h, BT558; i, BT455; j, BT653; k, BT183; l, BT649.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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