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8 results for “Jaagichlorella”
FIGURE 1 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 1. Molecular phylogeny of representatives belonging to the Watanabea clade based on SSU rDNA sequence comparisons. The phylogenetic tree shown was inferred using the maximum likelihood method based on the data set (29 taxa: 1787 aligned positions for SSU) using PAUP 4.0b10. For the analyses the best model was calculated by Modeltest 3.7. The setting of the best model was given as follows: TIM+I+G (base frequencies: A 0.2413, C 0.2367, G 0.2935, T 0.2285; rate matrix A-C 1.0000, A-G 2.1970, A-U 1.2024, C-G 1.2024, C-U 5.128, G-U 1.0000) with the proportion of invariable sites (I = 0.4935) and gamma shape parameter (G = 0.6539); The branches in bold are highly supported in all analyses (Bayesian values> 0.95 calculated with PHASE and MrBayes; bootstrap values> 90% calculated with PAUP using maximum likelihood, neighbor-joining, maximum parsimony and RAxML using maximum likelihood). The authentic strains of species are marked with an asterisk.
FIGURE 7 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 7. Morphology and phenotypic plasticity of Jaagichlorella sphaerica (UTEX 2485; A.–J.) and Kalinella apyrenoidosa var. japonica (SAG 2203; K.–R.); scale bar = 10 μm.
FIGURE 4 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 4. Morphology and phenotypic plasticity of Jaagichlorella luteoviridis (SAG 211-2a; A.–I.) and J. africana (SAG 2213; H.–T.); scale bar = 10 μm.
FIGURE 3 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 3. Comparison of the conserved region of ITS-2 among the species of Jaagichlorella and Kalinella. Extraction of this region and translation into a number code for its usage as barcode. The '/' indicated the position of the site loop in Helix III, which we excluded from the barcode. Number code for each base pair: 1 = A-U; 2 = U-A; 3 = G-C; 4 = C-G; 5 = G•U; 6 = U•G; 7 = pyrimidine-pyrimidine mismatch; 8 = deletion, single or unpaired bases. The phylogenetic tree shown was calculated using the neighbor-joining method based on the data set (69 number-coded positions of 11 haplotypes) using PAUP 4.0b10.
FIGURE 2 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 2. Molecular phylogeny of Jaagichlorella and Kalinella based on SSU and ITS rDNA sequence comparisons. The phylogenetic tree shown was inferred using the maximum likelihood method based on the data set (2655 aligned positions of 23 taxa) using PAUP 4.0b10. For the analyses the best model was calculated by Modeltest 3.7. The setting of the best model was given as follows: GTR+I+G (base frequencies: A 0.2324, C 0.2449, G 0.2794, T 0.2433; rate matrix A-C 1.5591, A-G 2.0795, A-U 1.4741, C-G 0.5739, C-U 4.8359, G-U 1.0000) with the proportion of invariable sites (I = 0.3875) and gamma shape parameter (G = 0.4780). The branches in bold are highly supported in all analyses (Bayesian values 1.00 calculated with PHASE and MrBayes; bootstrap values 100% calculated with PAUP using maximum likelihood, neighbor-joining, maximum parsimony and RAxML using maximum likelihood).
FIGURE 8 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 8. Molecular phylogeny of Jaagichlorella and Kalinella based on partial SSU rDNA sequence comparisons. The phylogenetic tree shown were inferred using the neighbor-joining method based on the data set (346 aligned positions of 24 taxa) using PAUP 4.0b10. The accession numbers of the partial sequences found in GenBank is given after the names of the isolates/clones. The letters after each sequence indicates their origin (A = aquatic; E = epiphytic; P = photobiont of lichen; S = epilithic on rocks or artificial hard substrates; U = unknown).
FIGURE 6 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 6. Morphology and phenotypic plasticity of Jaagichlorella hainangensis (SAG 2360; A.–S.) and J. geometrica (SAG 2549; T.–J'.); scale bar = 10 μm.
FIGURE 5 in The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle
FIGURE 5. Morphology and phenotypic plasticity of Jaagichlorella roystonensis var. epilithica (SAG 2133; A.–H.) and J. roystonensis var. handai (SAG 2198; I.–G'.); scale bar = 10 μm.
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