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6 results for “Kluyveromyces marxianus”
Reannotated genome of Kluyveromyces marxianus DMKU-1042
<p>A data-driven approach was taken to reannotate the genome of <em>Kluyveromyces marxianus</em> DMKU-1042. This vastly improves the accuracy of the original annotation and the work is submitted for publication. The data files here make the annotation available to users. The annotation is also available at https://gwips.ucc.ie/. </p>
Integrated data-driven reannotation of the Kluyveromyces marxianus genome reveals an expanded protein coding repertoire
<p>Supplementary data for Fenton et al. 2022. </p> <table> <tbody> <tr> <td>Supplementary Table</td> <td>ID</td> <td>Table Description</td> </tr> <tr> <td>supplementary table 1</td> <td>S1</td> <td>Transcript Start Site (TSS) metrics</td> </tr> <tr> <td>supplementary table 2</td> <td>S2</td> <td>Polyadenylation Site (PAS) metrics</td> </tr> <tr> <td>supplementary table 3</td> <td>S3</td> <td>NTE candidates </td> </tr> <tr> <td>supplementary table 4</td> <td>S4</td> <td>MTS candidates</td> </tr> <tr> <td>supplementary table 5</td> <td>S5</td> <td>iORFs candidates</td> </tr> <tr> <td>supplementary table 6</td> <td>S6</td> <td>uORFs candidates</td> </tr> <tr> <td>supplementary table 7</td> <td>S7</td> <td>ouORFs candidates</td> </tr> <tr> <td>supplementary table 8</td> <td>S8</td> <td>aORFs candidates</td> </tr> <tr> <td>supplementary table 9</td> <td>S9</td> <td>tRNA copy numbers</td> </tr> <tr> <td>supplementary table 10</td> <td>S10</td> <td>novel gene periodicity scores</td> </tr> <tr> <td>supplementary table 11</td> <td>S11</td> <td>description of novel genes</td> </tr> <tr> <td>supplementary table 12</td> <td>S12</td> <td>comparison of published genomes</td> </tr> <tr> <td>supplementary table 13</td> <td>S13</td> <td>table corrections</td> </tr> <tr> <td>supplementary table 14</td> <td>S14</td> <td>start codon corrections</td> </tr> <tr> <td>supplementary table 15</td> <td>S15</td> <td>Genes with splicing (at least one intron)</td> </tr> </tbody> </table>
Protocols for marker-free gene knock-out and knock-down in Kluyveromyces marxianus using CRISPR/Cas9
<p>This file contains the CRISPR targets predicted for every gene in the NBRC1777 genome, you can use it to design primers to target the gene you are interested in. There is one folder per gene. The 'sgRNAcas9_report' file contains a list of all the predicted sites, their position in the gene, and other extra information (e.g. GC content, off targets, etc..). The 'TargetSeq.fa' file contains the sequence of the gene targeted. For more information see <a href="http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100448">http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100448</a></p>
Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth ssing sterol requirements enables anaerobic growth of the thermotolerant yeast Kluyveromyces marxianus
GEO Series GSE164344. Kluyveromyces marxianus; Saccharomyces cerevisiae. 18 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional expression level during exponential growth phase in Kluyveromyces marxianus
GEO Series GSE70111. Kluyveromyces marxianus. 6 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Next Generation Sequencing Facilitates Quantitative Analysis of two wine yeasts: Saccharomyces cerevisiae EC1118 and Kluyveromyces marxianus IWBT Y855
GEO Series GSE129483. Saccharomyces cerevisiae; Kluyveromyces marxianus. 12 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.