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139 results for “Kp”
Palaeoecological data of KP core, Kampar Peninsula, Riau, Sumatra, Indonesia
<p>Southeast Asian peatlands, along with their various important ecosystem services, are mainly distributed in the coastal areas of Sumatra and Borneo. These ecosystems are threatened by coastal development, global warming and sea level rise (SLR). Despite receiving growing attention for their biodiversity and as massive carbon stores, there is still a lack of knowledge on how they initiated and evolved over time, and how they responded to past environmental change, i.e., precipitation, sea level and early anthropogenic activities. To improve our understanding thereof, we conducted multi-proxy palaeoecological studies in the Kampar Peninsula and Katingan peatlands in the coastal area of Riau and Central Kalimantan, Indonesia. The results indicate that the initiation timing and environment of both peatlands are very distinct, suggesting that peat could form under various vegetation as soon as there is sufficient moisture to limit organic matter decomposition. The past dynamics of both peatlands were mainly attributable to natural drivers, while anthropogenic activities were hardly relevant. Changes in precipitation and sea level led to shifts in peat swamp forest vegetation, peat accumulation rates, and fire regimes at both sites. We infer that the simultaneous occurrence of El Niño-Southern Oscillation (ENSO) events and SLR resulted in synergistic effects which led to the occurrenceere fires in a pristine coastal peatland ecosystem, however, it did not interrupt peat accretion. In the future, SLR, combined with the projected increase in frequency and intensity of ENSO, can potentially amplify the negative effects of anthropogenic peatland fires. This prospectively stimulates massive carbon release, thus could, in turn, contribute to worsening the global climate crisis especially once an as yet unknown threshold is crossed and peat accretion is halted, i.e., peatlands lose their carbon sink function. Given the current rapid SLR, coastal peatland managements should start develop fire risk reduction or mitigation strategies.</p>
Probabilistic forecasts of the daily maximum of the Kp index produced by the SERENADE prototype model and three empirical models for the period 2010-2018
<p>This dataset contains the probabilistic outputs of SERENADE's first prototype model dedicated to the forecasting of the <span class="math-tex">\(\textit{Kp}_{\textrm{max, 24 h}}\)</span> index for forecasting horizons ranging between 2 and 7 days. The period covered is the one of the SDOML dataset, which is 2010-05 --- 2018-12. All data is contained in a single pickle file, that can be opened in Python, using the following code lines:</p> <p><span class="math-tex">\(\texttt{import pickle}\\ \texttt{with open(DATA_PATH+`/serenade_outputs.pkl', `rb') as f:}\\ ~~~~\texttt{dict_outputs = pickle.load(f)}\)</span></p> <p>The pickle file contains a dictionnary, which itself contains Pandas DataFrames. Each DataFrame corresponds to a forecasting horizon. The dictionnary's keys are the forecasting horizons stored as strings, that is:</p> <p><span class="math-tex">\(\texttt{dict_output.keys() = [`2',`3',`4',`5',`6',`7']}\)</span></p> <p>The DataFrames are indexed by datetime. They contain the observed (true) hourly values of the daily maximum of the Kp index, the forecasts provided by SERENADE and three baseline models (Climatology model, Persistence model and 27-day Recurrence model). The forecast values include the mean and the standard deviation of the forecast normal distributions. Missing moments are due to the absence of EUV images needed to provide the forecast at the given moment.</p> <p> </p>
Рис. 2. Psychidae: 1 — Sterrhopterix fusca, самец, Буреинский заповеΑник, корΑон «КП», 26.06.2020 (1a — генитаΛии); Arctiidae: 2 — Atolmis rubricollis, самец, Буреинский заповеΑник, корΑон «Новый МеΑвежий», 6.07.2016; 3 — Dodia albertae, самец, там же, 2.07.2016; 4 — D. albertae, самка, там же, 2.07.2016; 5 — D. diaphana, самка, там же, 2.07.2016; 6 — D. diaphana, самец, там же, 3.07.2016; 7 — Borearctia menetriesii, самка, там же, 1.07.2018; 8 — Arctia caja sajana, самец, там же, 26.07.2018; 9 — A. c. sajana, самка, там же, 8.07.2020; 10 — A. flavia, самец, там же, 28.07.2017; 11 — A. flavia, самец, Нанайский р-н, автоΑорога «ΑиΑога — Ванино», ручей СтуΑеный, 8–12.07.2014 Fig. 2. Psychidae: 1 — Sterrhopterix fusca, Bureinsky State Nature Reserve, cordon "KP", 26.06.2020 (1a — genitalia); Arctiidae: 2 — Atolmis rubricollis, male, Bureinsky State Nature Reserve, Novyi Medvezhii cordon, 6.07.2016; 3 — Dodia albertae, male, same location, 2.07.2016; 4 — D. albertae, female, same location, 2.07.2016; 5 — D. diaphana, female, same location, 2.07.2016; 6 — D. diaphana, male, same location, 3.07.2016; 7 — Borearctia menetriesii, female, same location, 1.07.2018; 8 — Arctia caja sajana, male, same location, 26.07.2018; 9 — A. c. sajana, female, same location, 8.07.2020; 10 — A. flavia, male, same location, 28.07.2017; 11 — A. flavia, male, Nanaisky District, "Lidoga–Vanino" motorway, Studenyi creek, 8–12.07.2014 in Moths (Lepidoptera, Macroheterocera, Excluding Geometridae And Noctuidae S.L.) Of The Bureinsky State Nature Reserve And Adjacent Territories (Khabarovsk Krai, Russia)
Рис. 2. Psychidae: 1 — Sterrhopterix fusca, самец, Буреинский заповеΑник, корΑон «КП», 26.06.2020 (1a — генитаΛии); Arctiidae: 2 — Atolmis rubricollis, самец, Буреинский заповеΑник, корΑон «Новый МеΑвежий», 6.07.2016; 3 — Dodia albertae, самец, там же, 2.07.2016; 4 — D. albertae, самка, там же, 2.07.2016; 5 — D. diaphana, самка, там же, 2.07.2016; 6 — D. diaphana, самец, там же, 3.07.2016; 7 — Borearctia menetriesii, самка, там же, 1.07.2018; 8 — Arctia caja sajana, самец, там же, 26.07.2018; 9 — A. c. sajana, самка, там же, 8.07.2020; 10 — A. flavia, самец, там же, 28.07.2017; 11 — A. flavia, самец, Нанайский р-н, автоΑорога «ΑиΑога — Ванино», ручей СтуΑеный, 8–12.07.2014 Fig. 2. Psychidae: 1 — Sterrhopterix fusca, Bureinsky State Nature Reserve, cordon "KP", 26.06.2020 (1a — genitalia); Arctiidae: 2 — Atolmis rubricollis, male, Bureinsky State Nature Reserve, Novyi Medvezhii cordon, 6.07.2016; 3 — Dodia albertae, male, same location, 2.07.2016; 4 — D. albertae, female, same location, 2.07.2016; 5 — D. diaphana, female, same location, 2.07.2016; 6 — D. diaphana, male, same location, 3.07.2016; 7 — Borearctia menetriesii, female, same location, 1.07.2018; 8 — Arctia caja sajana, male, same location, 26.07.2018; 9 — A. c. sajana, female, same location, 8.07.2020; 10 — A. flavia, male, same location, 28.07.2017; 11 — A. flavia, male, Nanaisky District, "Lidoga–Vanino" motorway, Studenyi creek, 8–12.07.2014
Palaeoecological data of KP core, Kampar Peninsula, Riau, Sumatra, Indonesia
Open the record for dataset details and reuse information.
Metabolomics of KP mouse LUAD cell lines
<p>The goal of the experiment was to characterize the changes in metabolic pathway flux in these cells in response to HDAC and glutaminase inhibition. This dataset includes metabolomics of U-C13 glucose tracing (1h and 24h) and U-C13 glutamine (8h) of mouse LUAD cell lines with Kras overexpression and p53 knock-out (KP), carrying empty vector (EV) or overexpression of NRF2dNeh2 (NRF2) and treated with DMSO, Romidepsin or CB-839. 3 technical replicates were done per condition. The full methodology is described in the accompanying text file.</p>
Interactive VISION reports for "KP-Tracer Tumors from study "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
<p>This repository contains VISION reports for the KP-Tracer tumors described in the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity, and Paths of Tumor Evolution" (Yang*, Jones*, et al <em>bioRxiv</em> 2021).</p> <p>In this study, single-cell lineage tracing was performed in the <em>KP</em> autochthonous mouse model of non-small-cell lung cancer. Tumors were initiated with <em>Cre</em> recombinase (and optionally an additional gRNA targeting the other well-studied tumor suppressors) and allowed to grow for approximately 4-6 months at which point mice were sacrificed and tumors harvested. After purifying cancer cells by fluorescent markers, cells were profiled with the 10X chromium platform and four libraries were collected: a single-cell transcriptome library, a single-cell lineage tracing library, a single-cell multiplexing library, and a single-cell lenti-barcode library (used for confirming the clonality of tumors). Data was processed using the 10X Cellranger suite and custom pipelines as described in the manuscript above.</p> <p>For interactive work with these objects, users must first install VISION from Github (https://github.com/YosefLab/VISION) and then launch these reports either locally or on a server. For detailed instructions on how to launch reports, and create new reports for additional clones, please view our tutorials in our public reproducibility repository at https://github.com/mattjones315/KPTracer-release. </p>
Processed data for KP-Tracer Tumors from study "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
<p>This repository contains processed data associated with the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity, and Paths of Tumor Evolution" (Yang*, Jones*, et al <em>bioRxiv</em> 2021).</p> <p>In this study, single-cell lineage tracing was performed in the <em>KP</em> autochthonous mouse model of non-small-cell lung cancer. Tumors were initiated with <em>Cre</em> recombinase (and optionally an additional gRNA targeting the other well-studied tumor suppressors) and allowed to grow for approximately 4-6 months at which point mice were sacrificed and tumors harvested. After purifying cancer cells by fluorescent markers, cells were profiled with the 10X chromium platform and four libraries were collected: a single-cell transcriptome library, a single-cell lineage tracing library, a single-cell multiplexing library, and a single-cell lenti-barcode library (used for confirming the clonality of tumors). Data was processed using the 10X Cellranger suite and custom pipelines as described in the manuscript above. </p> <p>Data here represents the derived processed data from our analysis. The specific contents are described in a README contained within the repository.</p> <p>Briefly, however, we have provided here processed AnnData objects for the KP data (sgNT) and the integrated data across three genotypes (KP, KPA, and KPL). We also provide the gene lists associated with fitness, expansion annotations for each tree, as well as plasticity scores amongst other items. </p> <p>For code used in this study, we additionally have provided a reproducibility repository at https://github.com/mattjones315/KPTracer-release. </p>
Comparative proteomic profiling of non-treated and linalool-treated KPC-KP cells
<p>Proteomic abundance, gene ontology and KEGG pathway analysis.</p>
Supplementary material 1 from: Xu M, Liu Y, Möller E, LaGreca S, Moya P, Wang X, Timdal E, de Boer H, Barreno E, Wang L, Thüs H, Andrésson Ó, Magnússon KP, Ólafsdóttir ES, Heiðmarsson S (2023) Mycobiont-specific primers facilitate the amplification of mitochondrial small subunit ribosomal DNA: a focus on the lichenized fungal genus Melanelia (Ascomycota, Parmeliaceae) in Iceland. MycoKeys 96: 57-75. https://doi.org/10.3897/mycokeys.96.100037
Multiple sequence alignment for fungal mtSSU primer design in the family Parmeliaceae (except for Usnea)
Figures 84 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 84 Ecological niche modeling (ENM) under Maxent algorithm for Loxosceles tenochtitlan sp. nov. Colors represent different ranges of probabilities of presence (high probability: 0.75–1.0). Circles represent known records of the new species. Blue lines represent biogeographical provinces proposed by Morrone (2004, 2005).
Figures 78-81 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 78-81 Sexual dimorphism of Loxosceles tenochtitlan sp. nov. (T test) 78 box plots showing the variation of leg length 1 between males and females (t = -1.3106, p = 0.1981, df = 37, α = 0.05) 79, 80 box plots showing variation of carapace length (79) and width (80) between males and females (length: t = 1.498, p = 0.142, df = 38, α = 0.05; width: t = 0.6955, p = 0.4912, df = 36, α = 0.05) 81 linear morphometric variation of leg I length between males and females of L. tenochtitlan and L. misteca (T test) (males: t = 3.6174, p = 0.00331, df = 13, α = 0.05; females: t = 0.274, p = 0.787, df = 17, α = 0.05).
Figures 74-77 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 74-77 Geometric morphometry of the tibia shape on retrolateral view of the palps of males of L. tenochtitlan sp. nov. (N = 12) and L. misteca (N = 9) 74CVA plot showing a significant difference (χ2 = 10.2555, df = 2, p = 0.00593003, λ = 0.5988) between both species in the tibiae shape 75 deformation grid, the vectors indicate the direction of change in the tibia with respect to the average shape of the 21 individuals analyzed of both species 76, 77 palps of the males of L. misteca and L. tenochtitlan sp. nov. respectively, retrolateral views (red arrows indicate the change in the shape of the tibiae of the species analyzed).
Figures 7-13 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 7-13 Live female specimens of the Loxosceles tenochtitlan sp. nov. from Street Cruz Verde #132, Tlalpan, Mexico City, Mexico (type locality). Red arrows indicate specific places where the specimens were collected inside the house. Photographs by Martín Sánchez Vílchis (2019).
Figures 56-61 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 56-61 Loxosceles tenochtitlan sp. nov. Variation of the seminal receptacles of the females, dorsal views 56 Street Cruz Verde #132, Tlalpan, Mexico City (type locality) (female paratype) 57 Los Reyes Copilco, Fracc. Areada Dpto. 102-A, Coyoacán, Mexico City 58 Street Juárez #23, San Mateo Ixtacalco, Municipality Cuautitlán Izcalli, Estado de Mexico 59 Street Reforma #5, Santiago Tlacochcalco, Municipality of Tepeyanco, Tlaxcala 60, 61 Street Juárez Norte #214, Huamantla, Municipality of Huamantla, Tlaxcala, Mexico.
Figures 62-69 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 62-69 Loxosceles misteca Gertsch, 1958 62–65 variation of the male palps, left palps, prolateral views 62 Grutas General Carlos Pacheco, Municipality Pilcaya, Guerrero 63 Cueva del Diablo Acuitlalpan, Municipality Taxco, Guerrero 64 boulevard Cuauhtémoc #99, Colonia Lomas de Cortes, Municipality Cuernavaca, Morelos 65 Grutas de Cacahuamilpa National Park, Municipality Pilcaya, Guerrero 66–69 variation of the seminal receptacles of the females, dorsal views 66, 67 Agustin Lorenzo Cave, Mexcaltepec, Municipality Taxco de Alarcón, Guerrero 68, 69 Botanical Garden Cave, Grutas de Cacahuamilpa National Park, Municipality Pilcaya, Guerrero.
Figures 48-55 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 48-55 Loxosceles tenochtitlan sp. nov. Variation of the male palps, left palps, prolateral views 48 turiello Guerra, Street Cuitlahuac S/N, Tlalpan, Mexico City 49 Cruz Verde #132, Tlalpan, Mexico City (type locality) 50 Street Tepocatl #61, Pedregal de Santo Domingo, Coyoacán, Mexico City 51 Los Reyes Copilco, Frac. Areada Dpto. 102-A, Coyoacán, Mexico City 52, 53 Street Reforma #5, Santiago Tlacochcalco, Municipality of Tepeyanco, Tlaxcala 54, 55 Street Juárez Norte #214, Huamantla, Municipality Huamantla, Tlaxcala, Mexico. Scale bars: 0.5 mm.
Figures 35-37 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 35-37 Loxosceles tenochtitlan sp. nov. Male paratype 35 right palp, tarsus, bulb and embolus, dorsal view 36 right palp, retrolateral view 37 detail of the canal along the embolus.
Figures 42-47 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 42-47 Male holotype (examined) of Loxosceles misteca Gertsch, 1958 (AMNH_IZC 00327631), from Taxco, Municipality Taxco de Alarcón, Guerrero, Mexico; 1946, collected in the fall, Leo Isaacs leg. 42–44 left palp, prolateral, dorsal and retrolateral views respectively 45–47 detail of the bulb and embolus, dorsal, retrolateral and apical views, respectively. Scale bars: 0.5 mm (42–44), 0.2 mm (45–47).
Figures 38-41 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 38-41 Male holotype (examined) of Loxosceles misteca Gertsch, 1958 (AMNH_IZC 00327631), from Taxco, Municipality Taxco de Alarcón, Guerrero, Mexico; Date? 1946, collected in the fall, Leo Isaacs leg. 38, 39 habitus of male holotype, dorsal and ventral views, respectively 40 carapace 41 label of the holotype. Scale bars: 1 mm (38–40).
Figures 19-22 from: Valdez-Mondragón A, Navarro-Rodríguez CI, Solís-Catalán KP, Cortez-Roldán MR, Juárez-Sánchez AR (2019) Under an integrative taxonomic approach: the description of a new species of the genus Loxosceles (Araneae, Sicariidae) from Mexico City. ZooKeys 892: 93-133. https://doi.org/10.3897/zookeys.892.39558
Figures 19-22 Loxosceles tenochtitlan sp. nov 19–20 habitus of male holotype, dorsal and ventral views, respectively 21–22 habitus of female paratype, dorsal and ventral views, respectively. Scale bars: 1 mm.
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