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50 results for “Leotiomycetes”
Comparative genomics of Helotiales (Leotiomycetes) and in silico analysis of temperature adaptations of plant-associated genes
<p><span>Table S1: Genome assembly size and quality for every species in this study; </span></p> <p><span>Table S2: Genome annotation counts for P450, virulence factors, effectors, and CAZy genes and their temperature adaptation.</span></p>
FIGURE 4 in Phylogeny and morphology reveal a new species of Chlorociboria (Chlorociboriaceae, Leotiomycetes) from southwestern China
FIGURE 4. Chlorociboria daliensis (HKAS 122863, holotype) a–c Paraphyses. d–f Asci. g–j Asci in Meltzer's reagent. k–m Ascospores. n Germinated ascospore. o Colonies on PDA. Scale bars a–j = 40 μm k–m = 5 μm, n = 10 μm.
FIGURE 1 in Phylogeny and morphology reveal a new species of Chlorociboria (Chlorociboriaceae, Leotiomycetes) from southwestern China
FIGURE 1. Maximum likelihood tree based on a combined dataset of nLSU and ITS sequences, showing the phylogenetic position of Chlorociboria daliensis. The MP bootstrap values (ML-BP) equal to or higher than 50%, ML bootstrap proportions (ML-BP) equal to or higher than 70% and Bayesian posterior proportions (BI-PP) equal to or higher than 0.90 are shown above the branches on the phylogenetic tree. Newly generated sequences are shown in blue. Ex-types are shown in bold black.
FIGURE 2 in Phylogeny and morphology reveal a new species of Chlorociboria (Chlorociboriaceae, Leotiomycetes) from southwestern China
FIGURE 2. The results of the pairwise homoplasy index (PHI) test for closely related species of Chlorociboria daliensis using LogDet transformation. PHI test results (Φw) <0.05 indicate significant recombination within the dataset.
FIGURE 2. Macroskyttea parmotrematis. A in Macroskyttea parmotrematis gen. et sp. nov. (Helotiales, Leotiomycetes, Ascomycota), a new lichenicolous fungus from Bolivia
FIGURE 2. Macroskyttea parmotrematis. A, habit of a ascomata: A, young almost close ascomata (Kukwa 11316), B, mature ascoma with strongly exposed dark pigmented disc (Bach et al. 97a); C, cross section of mature ascoma (Bach et al. 97a); D, cross section of young ascoma showing excipular hairs (Kukwa 11316); E, ascospores (Kukwa 11316). Scale bars: A–B—250 μm, C—50 μm, D—25 μm, E—10 μm.
FIGURE 1 in Macroskyttea parmotrematis gen. et sp. nov. (Helotiales, Leotiomycetes, Ascomycota), a new lichenicolous fungus from Bolivia
FIGURE 1. Three-locus (nuSSU, nuLSU and 5.8S of ITS) Maximum Likelihood tree indicating phylogenetic position of Macroskyttea parmotrematis within encoelioid-clade of Helotiales. The branches supported by Maximum Likelihood and Bayesian analysed are marked with thicker lines, * indicates support in one analyse. Bootstrap values (BP)≥than 70 and Bayesian posterior probabilities (PP)≥than 0.95 are indicated above the branches.
FIGURE 3. Macroskyttea parmotrematis. A in Macroskyttea parmotrematis gen. et sp. nov. (Helotiales, Leotiomycetes, Ascomycota), a new lichenicolous fungus from Bolivia
FIGURE 3. Macroskyttea parmotrematis. A, cross section of mature ascoma mounted in LPCB (Bach et al. 97a); B, cross section of young ascoma mounted in LPCB (Etayo 28402); C, cross section of young ascoma mounted in LPCB showing inner (left) and ectal (right) exciple (Etayo 28402); D, inner exciple mounted in LPCB showing thin-walled cells (structura angularis) (Etayo 28402); E, ectal exciple mounted in LPCB showing thick-walled cells (structura globosa) (Etayo 28402); F, asci in different development stages mounted in Congo Red showing apically thickened tholus with a narrow ocular chamber with a characteristic widening on top, two right-hand asci with 4-guttulate ascospores (Etayo 28402). Scale bars: A–B—25 μm, C–F—10 μm.
FIGURE. 50 in The phylogenetic relationships of Torrendiella and Hymenotorrendiella gen. nov. within the Leotiomycetes
FIGURE. 50% majority-rule consensus tree based on a Bayesian analysis of SSU, 5.8S rRNA, and LSU gene sequences. Bayesian posterior probabilities greater than 90% are shown above the edges. Sequences for taxa marked # from Wang et al. (2006), the Chaetomella and Pilidium sequences are from Rossman et al. (2004), the remaining taxa sequenced as part of this study are listed in Table 1.
Supplementary material 1 from: Zhang Z-Y, Han Y-F, Chen W-H, Tao G (2023) Additions to Thelebolales (Leotiomycetes, Ascomycota): Pseudogeomyces lindneri gen. et sp. nov. and Pseudogymnoascus campensis sp. nov. MycoKeys 95: 47-60. https://doi.org/10.3897/mycokeys.95.97474
Sequences of primers used for the amplification of molecular markers in this study. GenBank accession numbers of the sequences used in this study. The best-fit evolutionary model in the phylogenetic analyses
Supplementary material 1 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
: Data type: occurrence
Figure 7 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 7 Bayesian continuous-space phylogeographic analyses for Dasyscyphella longistipitata, and Fagus crenata grouped in three consecutive times. Red dots represent D. longistipitata localities, and blue areas are polygons for the nodes of dispersion for F. crenata.
Figure 6 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 6 Areas of conserved environmental suitability for Dasyscyphella longistipitata, where red is high (overlapping of four layers), yellow medium (at least three overlapping layers), and gray low (two overlapping layers) suitability.
Figure 4 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 4 Haplotype network based on the concatenated sequences of ITS and beta-tubulin of Dasyscyphella longistipitata. The size of the circles represents the haplotype frequency; white dots represent mutational steps between haplotypes (note that the branches lengths do not correspond to genetic distances). Colors represent the locality of origin arranged as a latitudinal gradient where red represents the further north site.
Figure 1 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 1 Geographical distribution of the sampling localities for Dasyscyphella longistipitata associated with cupules of Fagus crenata in Japan. Red dots and numbers correspond to D. longistipitata; whereas blue dots represent F. crenata study sites from Fujii et al. (2002). For sites nomenclature see Table 1.
Figure 3 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 3 Multivariate analyses of the genetic diversity inferred from ITS and beta-tubulin concatenated sequences of Dasyscyphella longistipitataA Principal Component Analysis (PCA) of genetic diversity at the individual level B principal Correspondence Analysis (PCoA) of genetic diversity using the localities as grouping factor. Colors represent the locality of origin arranged as a latitudinal gradient where red represents the further north site.
Supplementary material 5 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
: Data type: (measurement/occurrence/multimedia/etc.)
Figure 5 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 5 Bayesian Skyride Plot for ADasyscyphella longistipitata using the concatenated ITS and beta-tubulin, and BFagus crenata, using the reported sequences in Fujii et al. (2002). The y-axis represents the scaled effective population size (log10(Ne*u)), and the x-axis represents time as substitutions per site. Shaded area shows the 95% HPD of the posterior distribution. Solid lines show the median value of effective population size. Dotted shades show the upper and lower 95% highest posterior density. Note that the x-axis in A and B are non-equivalent to each other.
Supplementary material 3 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
: Data type: statistical data
Supplementary material 2 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
: Data type: statistical data
Figure 2 from: Gasca-Pineda J, Velez P, Hosoya T (2020) Phylogeography of post-Pleistocene population expansion in Dasyscyphella longistipitata (Leotiomycetes, Helotiales), an endemic fungal symbiont of Fagus crenata in Japan. MycoKeys 65: 1-24. https://doi.org/10.3897/mycokeys.65.48409
Figure 2 Paired PhiST values for Dasyscyphella longistipitata in the 14 studied localities. White asterisks indicate significance at p ≤ 0.05.
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