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16 results for “Leuciscus”
Data from: "De novo assembly transcriptome for the rostrum dace (Leuciscus burdigalensis, Cyprinidae: fish) naturally infected by a copepod ectoparasite" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015
The emergence of pathogens represents substantial threats to public health, livestock, domesticated animals, and biodiversity. How wild populations respond to emerging pathogens has generated a lot of interest in the last two decades. With the recent advent of high-throughput sequencing technologies it is now possible to develop large transcriptomic resources for non-model organisms, hence allowing new research avenues on the immune responses of hosts from a large taxonomic spectra. We here focused on a wild population of the rostrum dace (Leuciscus burgiladensis) that is infected by Tracheliastes polycolpus, an emerging freshwater ectoparasite copepod. We used next generation Illumina sequencing technology to sequence the transcriptome of eight L. burdigalensis adult individuals collected in natura from the same sampling site. Four individuals were non-infected and four individuals were infected by T. polycolpus. We specifically focused on the spleen, the head kidney and epithelial cells and mucus from the fins, three tissues known to be involved in the immune response of fish. We used the Trinity methodology to reconstruct a de novo full-length transcriptome for L. burdigalensis. The resulting transcriptome will serve as an important broad-scale genomic resource for further studying the response of local population of L. burdigalensis to T. polycolpus pressures.
FIGURE 7. Alburnus caeruleus, FSJF 3356, individual from a in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 7. Alburnus caeruleus, FSJF 3356, individual from a population with COI sequence of A. sellal, 70 mm SL; Iraq: stream Zalm at Khurmal.
FIGURE 6 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 6. Alburnus sellal, from the top, a, not preserved, about 100 mm SL: Turkey: upper Göksu, a tributary of the Tigris south of Diyarbakır; b, FSJF 2224, 140 mm SL: Iran: River Kor north of Shiraz; c, FSJF 2870, 88 mm SL: Turkey: Tigris at Maden; d, FSJF 3685, 142 mm SL: Iraq: Choman at Nawprdan; e, FSJF 3679, 117 mm SL, from type locality of A. selcuklui, Turkey: stream Kesan about 3 km south-west of Güntepe.
FIGURE 5 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 5. Alburnus timarensis, not preserved, about 120 mm SL; Turkey: stream Karasu 5 km east of Alaköy. Photo M. Özuluğ.
FIGURE 3 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 3. Alburnus kurui, from the top, a, FSJF 3675, 69 mm SL; b, FFR 04660, 66 mm SL; c, FFR 04660, 74 mm SL, Turkey: Yüksekova wetland.
FIGURE 2 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 2. Unrooted median-joining network of the COI haplotypes (ε=0) of a subset of the species used in the analyses. Alburnus baliki, A. kotschyi, A. orontis, A. qalilus and all Petroleuciscus have been omitted for clarity. Circle size corresponds to sample size; number of mutational steps given in parentheses. Small black circles represent median vectors, i.e., hypothetical, reconstructed haplotypes. Not all edges are drawn to scale.
FIGURE 1 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 1. Maximum likelihood estimation of the phylogenetic relationships based on the mitochondrial COI barcode region (Kimura 2-parameter model, discrete Gamma distribution for rate differences with 5 categories, +G parameter = 0.2922). Nucleotide positions with less than 95% site coverage were eliminated resulting in 572 analyzed positions. Numbers of major nodes indicate bootstrap values above 75 from 1000 pseudoreplicates from the ML, NJ and MP method. The tree is drawn to scale with branch lengths depicting number of substitutions per site. Solid black bar shows the delimitation result using the PTP approach (21 groups), dashed line the result based on the mPTP model (12 groups).
Data from: "De novo assembly transcriptome for the rostrum dace (Leuciscus burdigalensis, Cyprinidae: fish) naturally infected by a copepod ectoparasite" in Genomic Resources Notes accepted 1 December 2014 to 31 January 2015
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FIGURE 14 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 14. Turkey: Dalaman River, type locality of A. carianorum.
FIGURE 11. Alburnus demiri, ZMB 33769 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 11. Alburnus demiri, ZMB 33769, paratype, 88 mm SL; Turkey: stream Tahtali.
FIGURE 4. Alburnus kurui, ZMH 7361, 83 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 4. Alburnus kurui, ZMH 7361, 83 mm SL, holotype; Turkey: Yüksekova suyu.
FIGURE 13 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 13. Turkey: Lake Hazar, habitat of A. heckeli.
FIGURE 10. Alburnus carianorum, FSJF 2345, about 75 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 10. Alburnus carianorum, FSJF 2345, about 75 mm SL; Turkey: Dalaman River at Ortaca.
FIGURE 12 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 12. Turkey: Yüksekova wetland, habitat of A. kurui.
FIGURE 8. Alburnus heckeli, FSJF 2505, about 100 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 8. Alburnus heckeli, FSJF 2505, about 100 mm SL; Turkey: Lake Hazar at Plajköy.
FIGURE 9 in Generic assignment of Leuciscus kurui Bogutskaya from the upper Tigris drainage, and a replacement name for Alburnus kurui Mangit & Yerli (Teleostei: Leuciscidae)
FIGURE 9. Alburnus tarichi, YYU-ZF 2007-23, SL 155 mm, Van prov.: stream Karmuc. Photo: M. Elp.
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