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Dataset results
59 results for “Limb regeneration”
Supplementary information for 'Distinct gene expression dynamics in developing and regenerating crustacean limbs', by Sinigaglia et al.
<p>Supplementary data and code for the manuscript <em>'Distinct gene expression dynamics in developing and regenerating crustacean limbs'</em>, by Sinigaglia et al.</p>
Figure. The adult male of Podarcis lilfordi from Sa Dragonera, Mallorca (Balearic Islands), presenting a tail-like appendage in the left hind limb. in A case of limb regeneration in a wild adult Podarcis lilfordi lizard
Figure. The adult male of Podarcis lilfordi from Sa Dragonera, Mallorca (Balearic Islands), presenting a tail-like appendage in the left hind limb.
Data from: Nerve-dependent regulation of H3K27me3 during the induction of patterning competency in regenerating axolotl limb cells
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Exploring cell diversity and fidelity in crustacean limb regeneration using single-nucleus RNA sequencing
<p>R objects containing datasets generated by snRNA-seq on Parhyale hawaiensis limbs. These datasets have been generated during my Phd thesis.</p>
Detecting regenerating limbs in Hemigrapsus sanguineus based on limb mass
<ol> <li><span>Regeneration of lost appendages is a gradual process in many species, spreading energetic costs of regeneration through time. Energy allocated to regeneration of lost appendages cannot be used for other purposes and therefore commonly elicits energetic trade-offs in biological processes. </span></li> <li><span>We used limb loss in the Asian shore crab <em>Hemigrapsus</em> <em>sanguineus</em> to compare the strength of energetic trade-offs resulting from historic limb losses that have been partially regenerated versus current injuries that have not yet been repaired. Consistent with previous studies, we show that limb loss and regeneration results in trade-offs that reduce reproduction, energy storage, and growth. </span></li> <li><span>As may be expected, we show that trade-offs in these metrics from historic limb losses far outweigh trade-offs from current limb losses, and correlate directly with the degree of historic limb loss that has been regenerated. </span></li> <li><span>As regenerating limbs get closer to their normal size, these historical injuries get harder to detect, despite the continued allocation of additional resources to limb development. Our results demonstrate the importance of a method for identifying historic appendage losses and of quantifying the amount of regeneration that has already occurred, as opposed to assessing only current injury, to accurately assess the strength of energetic trade-offs in animals recovering from non-lethal injury.</span></li> </ol>
Detecting regenerating limbs in Hemigrapsus sanguineus based on limb mass
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Fluctuation of cellular differentiation in limb regeneration is regulated by Pde4b in urodele amphibians
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Retinoic acid receptors and the control of positional information in the regenerating axolotl limb
GEO Series GSE182296. Ambystoma mexicanum. 12 samples. Type: Expression profiling by high throughput sequencing.
Circadian Dysfunction in Skeletal Muscle Impairs Limb Perfusion and Muscle Regeneration in Peripheral Artery Disease [Myotube-RNAseq]
GEO Series GSE275812. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Comparative Transcriptional Profiling of the Axolotl Limb Identifies a Tripartite Regeneration-Specific Gene Program
GEO Series GSE36451. Ambystoma mexicanum. 80 samples. Type: Expression profiling by array.
HDAC1 paces the temporal expression of morphogenic genes during axolotl limb regeneration
GEO Series GSE157716. Ambystoma mexicanum. 20 samples. Type: Expression profiling by high throughput sequencing.
Distinct gene expression dynamics in developing and regenerating crustacean limbs
GEO Series GSE196485. Parhyale hawaiensis. 212 samples. Type: Expression profiling by high throughput sequencing.
Tig1 regulates proximo-distal identity during salamander limb regeneration
GEO Series GSE184948. Ambystoma mexicanum. 18 samples. Type: Expression profiling by high throughput sequencing.
Molecular basis of positional memory in limb regeneration [RNA-seq]
GEO Series GSE284768. Ambystoma mexicanum. 25 samples. Type: Expression profiling by high throughput sequencing.
Hyaluronic acid networks and emergent tissue mechanics orchestrate mammalian limb regeneration
GEO Series GSE274858. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Multi-species atlas resolves an axolotl limb development and regeneration paradox
GEO Series GSE243225. Ambystoma mexicanum. 1 samples. Type: Other.
Comparative multi-omic analysis reveals conserved and derived mechanisms of fin and limb regeneration [spatial transcriptomics II]
GEO Series GSE315993. Ambystoma mexicanum. 4 samples. Type: Other.
Comparative multi-omics analysis reveals shared and derived mechanisms of fin and limb regeneration [ATAC-seq]
GEO Series GSE315999. Polypterus senegalus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Axolotl mandible regeneration occurs through mechanical gap closure and a shared regenerative program with the limb
GEO Series GSE271056. Ambystoma mexicanum. 8 samples. Type: Expression profiling by high throughput sequencing.
Blastemal progenitors modulate immune signaling during early limb regeneration.
GEO Series GSE111213. Ambystoma mexicanum. 27 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.