Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
10
datasets available to search
ShareScore release 0.9.0
Dataset results
10 results for “Limia”
Phylogeography of Limia vittata (Cyprinodontiformes: Poeciliidae): geographical distribution of mitochondrial haplotypes is comparable to other Cuban poeciliids
<p>This is the supplementary material associated with the article "Phylogeography of <em>Limia vittata</em> (Cyprinodontiformes: Poeciliidae): geographical distribution of mitochondrial haplotypes is comparable to other Cuban poeciliids", published by the Biological Journal of the Linnean Society (<a href="https://doi.org/10.1093/biolinnean/blad040">https://doi.org/10.1093/biolinnean/blad040</a>). The following documents (pdf format) are included:</p> <p><strong>Supporting Information 1 </strong></p> <p><strong>Table S1.</strong> Sampling size (n) and haplotype (<em>COI</em>+<em>CR</em>) information for each sampling locality of <em>L. vittata</em> included in this study. Numbers correspond to those indicated in Figure 1. A star (*) represents a new locality record for <em>L. vittata</em>. ANC: acronym of the Acuario Nacional de Cuba Collection, La Habana, Cuba.</p> <p><strong>Supporting Information 2</strong></p> <p><strong>Table S1.</strong> Prior distribution of parameters used for the analysis of the <em>L. vittata</em> data based on the ABC approach using DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al</em>., 2014</a>). Time is in generations. W-PR: Western Pinar del Río population, W-C: Western-Central population, C-E: Central-Eastern population.</p> <p><strong>Table S2.</strong> Summary statistics between <em>L. vittata</em> haplogroups for each scenario based on 3 × 10<sup>6</sup> simulated datasets. NHA: number of alleles, NSS: number of segregating sites, MPD: mean of pairwise differences, VPD: variance of pairwise differences, MP2: mean pairwise differences within samples, MPB: mean pairwise differences between samples, HST: F<sub><em>ST</em></sub> between samples.</p> <p><strong>Table S3.</strong> Posterior distributions of the parameters based on scenario B for <em>L. vittata</em>. Data were obtained from 1% of the simulated dataset (1 × 10<sup>6</sup>). Time is in generations. W-PR: Western Pinar del Río population, W-C: Western-Central population, C-E: Central-Eastern population. RMAE: relative median of absolute error.</p> <p><strong>Figure S1.</strong> PCA of the summary statistics of the observed dataset and the dataset generated from the prior distribution of parameters to evaluate the three biogeographic scenarios explaining the current distribution of <em>L. vittata</em>. The analysis was performed using DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al.</em>, 2014</a>).</p> <p><strong>Figure S2.</strong> Posterior probability of the biogeographic scenarios tested to explain the current distribution of <em>L. vittata</em>. Logistic regression was used to compute the posterior probability using the ABC approach as implemented in DIYABC v.2.1.0 (<a href="#CIT0008">Cornuet <em>et al.</em>, 2014</a>).</p> <p><strong>Supporting Information 3</strong></p> <p><strong>Figure S1.</strong> Bayesian tree depicting the relationships of 160 partial <em>COI</em>+<em>CR</em> sequences of <em>L. vittata</em>. The red dots depict samples from eastern localities (Yateras, Sabanalamar, and Yacabo Abajo) sharing the W-C haplogroups (H9 and H10). Bootstrap support (≥ 93) and Bayesian posterior probabilities (≥ 0.95) are shown for the main clades.</p> <p><strong>Supporting Information 4</strong></p> <p><strong>Figure S1.</strong> Mismatch distribution of pairwise haplotype differences from partial <em>COI</em> and <em>CR</em> sequences for the three haplogroups recovered in <em>L. vittata</em>. Dashed lines represent the distribution of the observed pairwise nucleotide differences, whereas solid lines represent the values expected after a population growth or decline model.</p> <p><strong>Supporting Information 5</strong></p> <p><strong>Figure S1.</strong> Maximum Likelihood tree and haplotype network of <em>Girardinus falcatus</em>, <em>Girardinus metallicus,</em> and the <em>Gambusia punctata</em> species complex based on <em>cytb</em> partial sequences. Each colour represents a geographic region in Cuba. Green: westernmost Cuba, blue: western Cuba, orange: central Cuba, red: eastern Cuba. Numbers on tree branches are bootstrap values ≥ 95% and hatch marks on the networks are the number of mutations. n: number of individuals, H: number of haplotypes, <em>h</em>: haplotype diversity, π: nucleotide diversity, SD: standard deviation.</p> <p><strong>Table S1.</strong> Sampling size (n), GenBank accession numbers, and studies that made available the sequences of cytochrome <em>b</em> used for the phylogeographic comparisons of the different poeciliids in Cuba.</p>
No geographical differences in male mate choice in a widespread fish, Limia perugiae
Open the record for dataset details and reuse information.
FIGURE 7 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 7. Habitat where Limia mandibularis sp. nov. was collected. The locality is found at the north end of Lake Miragoane and corresponds with locality represented by the white circle in Figure 1.
FIGURE 2 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 2. Limia mandibularis sp. nov., holotype OMNH 86828, adult male 35.5 mm SL (top) and paratype OMNH 86829, adult female 41.0 mm SL (bottom).
FIGURE 1 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 1. Map showing the collection locality for Limia mandibularis sp. nov. Enlargement shows greater details of Lake Miragoane in Haiti, with the type locality for Limia mandibularis (white circle) at the north bight of the lake.
FIGURE 5 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 5. Cleared and stained gonopodium tip of Limia mandibularis sp. nov., paratype OMNH 86831, adult male, 38.5 mm SL.
FIGURE 6 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 6. Female of Limia mandibularis sp. nov (48.5 mm SL) showing coloration in a live specimen.
Male secondary sexual traits do not predict female preference in Caribbean livebearing fishes (Limia)
Open the record for dataset details and reuse information.
FIGURE 3 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 3. Mouth of a cleared specimen of Limia mandibularis sp. nov. (OMNH 86831, female, 41.5 mm SL) showing the peculiar arrangement of bones of the upper and lower jaws. Premax: premaxillar, max: maxilla, dent: dentary, ang: anguloarticular, qu: quadrate
FIGURE 4 in Limia mandibularis, a new livebearing fish (Cyprinodontiformes: Poeciliidae) from Lake Miragoane, Haiti
FIGURE 4. Head of Limia mandibularis sp. nov. showing the protuberance in the lower jaw (a), the single preorbital canal forming an open groove (b) and the single preopercular canal forming an open groove (c). Red lines show the quadrato-mandibular joint forming nearly a right angle between the front of the mouth and the inferior edge of the eye globe.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.