Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
52
datasets available to search
ShareScore release 0.9.0
Dataset results
52 results for “Lineage barcoding”
A barcode-based phylogenetic characterization of Phytophthora cactorum identifies two cosmopolitan lineages with distinct host affinities and the first report of Phytophthora pseudotsugae in California
Open the record for dataset details and reuse information.
FIGURES 6–9 in A new species of Deutonura (Collembola: Neanuridae: Neanurinae) from north-eastern Algeria, and characterisation of two intraspecific lineages by their barcodes
FIGURES 6–9. Deutonura zana sp. nov. (continued): 6, fused tubercles Di of Abd. V; 7, apex of Di1 macrochaeta of Abd. V; 8, ventral chaetotaxy of abdominal sternites; 9, tibiotarsus and pretarsus of leg III. Dotted areas, muscular insertions (Fig. 8); black ovals, pseupores (p, Fig. 8).
FIGURES 2–5 in A new species of Deutonura (Collembola: Neanuridae: Neanurinae) from north-eastern Algeria, and characterisation of two intraspecific lineages by their barcodes
FIGURES 2–5. Deutonura zana sp. nov.: 2, dorsal chaetotaxy; 3, dorsal chaetotaxy of Ant. III–IV; 4, labium; 5, central area of head (tubercles Af and CL). Dotted areas, muscular insertions (Fig. 2); black ovals, pseudopores (p, Fig. 2).
Supplementary material 2 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Uncorrected P-Distance : Explanation note: Uncorrected P-Distance between the 66 analyzed specimens.
Supplementary material 1 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Table. Estimates of Evolutionary Divergence between Sequences: Explanation note: The number of base differences per site from between sequences are shown. The analysis involved 45 nucleotide sequences. Codon positions included were 1st+2nd+3rd+Noncoding. All ambiguous positions were removed for each sequence pair. There were a total of 658 positions in the final dataset. Evolutionary analyses were conducted in MEGA6.
FIGURE 28. Apogon quadrisquamatus Lineage A in Identification of early life-history stages of Caribbean Apogon (Perciformes: Apogonidae) through DNA Barcoding
FIGURE 28. Apogon quadrisquamatus Lineage A, adult, 21.0 mm SL, DNA # BLZ 8291, photograph by C. Baldwin
FIGURE 30. Apogon quadrisquamatus Lineage B in Identification of early life-history stages of Caribbean Apogon (Perciformes: Apogonidae) through DNA Barcoding
FIGURE 30. Apogon quadrisquamatus Lineage B, juvenile, 14.0 mm SL, DNA # BLZ 7712, photograph by C. Baldwin and L. Weigt.
FIGURE 29. Apogon quadrisquamatus Lineage B in Identification of early life-history stages of Caribbean Apogon (Perciformes: Apogonidae) through DNA Barcoding
FIGURE 29. Apogon quadrisquamatus Lineage B, adult, 24.0 mm SL, DNA # BLZ 6180, photograph by J. Mounts and C. Baldwin.
FIGURE 1 in A new species of Deutonura (Collembola: Neanuridae: Neanurinae) from north-eastern Algeria, and characterisation of two intraspecific lineages by their barcodes
FIGURE 1. Deutonura zana sp. nov., habitus, to show colour is stable in all individuals.
FIGURE 10 in A new species of Deutonura (Collembola: Neanuridae: Neanurinae) from north-eastern Algeria, and characterisation of two intraspecific lineages by their barcodes
FIGURE 10. NJ tree of MOTUs. See material and methods for details of tree reconstruction.
Supplementary material 1 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Full specimen information : Explanation note: Full specimen information.
Supplementary material 1 from: Pazhenkova EA, Zakharov EV, Lukhtanov VA (2015) DNA barcoding reveals twelve lineages with properties of phylogenetic and biological species within Melitaea didyma sensu lato (Lepidoptera, Nymphalidae). ZooKeys 538: 35-46. https://doi.org/10.3897/zookeys.538.6605
Table S1: Explanation note: Collection data of the samples sequenced in this study.
Supplementary material 2 from: Pazhenkova EA, Zakharov EV, Lukhtanov VA (2015) DNA barcoding reveals twelve lineages with properties of phylogenetic and biological species within Melitaea didyma sensu lato (Lepidoptera, Nymphalidae). ZooKeys 538: 35-46. https://doi.org/10.3897/zookeys.538.6605
Table S2: Explanation note: List of the samples used in this study
Figure 1 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 1 - Maximum likelihood tree, 1000 bootstrap replicates. L1–L3 = Stenotaenia linearis lineages 1–3; NRW = North Rhine-Westphalia; Baden-W = Baden-Württemberg. Stenotaenia 'sorrentina' comes from GenBank and might refer to Stenotaenia forficularis. For exact locality data, see Table 1.
Figure 3 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 3 - Map of Stenotaenia linearis samples studied during GBOL (large dots), as well as other Stenotaenia linearis records from Edaphobase, the ZSM and ZFMK collection (small dots, status 10.2014). Yellow = Stenotaenia linearis L1; Blue = Stenotaenia linearis L2; Green = Stenotaenia linearis L3. (A) Stenotaenia linearis in the field, photo: J. Spelda, specimen from Stuttgart-Hofen, Zuckerberg.
Figure 2 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 2 - Frequency distribution of pairwise intraspecific (blue) and interspecific (red) distances. Blue circle = intraspecific distances of Geophilus alpinus and among Stenotaenia linearis L3; Red circle = interspecific distances and distances between Stenotaenia linearis lineages. Basic table see Suppl. material 1.
Figure 4 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Figure 4 - Distribution map of all successfully sequenced Central European specimens of Cryptops parisi. Different colours mark the three different clades. Yellow = Cryptops parisi sensu stricto; blue = Cryptops parisi sebini; green = Cryptops parisi lineage 3 (potentially Cryptops cf. hortensis sensu Pichler 1987).
Figure 3 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Figure 3 - Frequency distribution of pairwise intraspecific (blue) and interspecific (red) distances. All lineages of Cryptops parisi treated as one species, Cryptops parisi sensu lato. Basic table see Suppl. material 1.
Figure 2 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Figure 2 - Maximum likelihood tree under the GTR+G+I model, 1000 bootstrap replicates. Colours and symbols correspond to Maps (Figs 1, 4). Country of origin given after specimen number: AT = Austria; DE = Germany; GB = Wales; HR = Croatia; IT = Italy; SL = Slovenia. Photograph shows a specimen of Cryptops parisi s.s. from Breckerfeld (photo A. Steiner), western Germany. For full data on all specimens, see Table 1.
Figure 1 from: Wesener T, Voigtländer K, Decker P, Oeyen JP, Spelda J (2016) Barcoding of Central European Cryptops centipedes reveals large interspecific distances with ghost lineages and new species records from Germany and Austria (Chilopoda, Scolopendromorpha). ZooKeys 564: 21-46. https://doi.org/10.3897/zookeys.564.7535
Figure 1 - Distribution map of all successfully sequenced Central European specimens of Cryptops. Numbers refer to each specimen (see Table 1). Symbols and colours denote species. Blue rectangle = Cryptops parisi; red circle = Cryptops anomalans; green triangle = Cryptops hortensis; brown diamond = Cryptops croaticus; orange cross = Cryptops umbricus; light blue, orange, and yellow symbols mark undetermined Cryptops species.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.