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383 results for “Lolium perenne”
New annotation of the Lolium perenne genome described by Bryne et al, (2015)
<p>Annotation of the Lolium perenne genome described by Bryne <em>et al,</em> (2015, DOI: 10.1111/tpj.13037).</p> <p>To identify genic regions RNA sequencing data were aligned to the genome using Tophat (Tophat version: V2.0.11; Bowtie2 version: 2.1.0). Isoforms, of genes, were identified using Cufflinks (Version: 2.2.0). Open reading frames (ORF), were found using using program ORFpredictor (version: 3.0). Frame selection was assisted by BLASTX searching the proteomes of <em>Arabidopsis thaliana</em> (TAIR, version: 10), <em>Oryza sativa</em> (Ensembl)<em>, Gycine max </em>(Ensembl)<em>, Populus trichocarpa </em>(Ensembl)<em> and Manihot esculenta </em>(cassava, v4.1). The predicted CDS was back translated to annotate the GFF file created by Cufflinks for CDS using scripts kindly provided by Palmieri<em> et al.,</em> 2012 (doi: 10.1371/journal.pone.0046415). These results are included in the file LG_V2_full.gtf.</p> <p>Functional annoatation was using three sources. First, protein sequences were search against the <em>A. thaliana</em> proteome using BLASTP. Second, the proteins were search against the Swiss-Prot non-redundant protein database (<a href="http://www.uniprot.org/downloads">http://www.uniprot.org/downloads</a> downloaded 14/03/2016, UniProt Consortium, 2014), again using BLASTP. In the third step, the protein sequences were scanned against InterPro's signatures using InterProScan (Version: 5.16-55). These data are included in the file ALLXLOC.txt.</p>
Herbarium specimen image of Lolium perenne L., part of the collection of Royal Botanic Gardens, Kew
Part of a training dataset of scanned herbarium specimens. The data paper and a summary landing page will be published on Zenodo as it gets published.<br><br>Content of this deposition:<br><br>- A JSON-LD datafile listing the label data associated with this herbarium specimen. The Darwin and Dublin Core data standards are used for most values.<br>- A JPEG image file of the scanned herbarium sheet.<br>- A lossless TIFF image from which the JPEG image has been derived.
Dataset for "Combination of ryegrass (Lolium perenne L.) and tall fescue (Festuca aurundinacea Schreb.) improve yields in a low P soil."
<p>Dataset for the study "Combination of ryegrass (Lolium perenne L.) and tall fescue (Festuca aurundinacea Schreb.) improve yields in a low P soil."</p>
Lolium perenne L. (BR0000011558712)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011559788)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011556107)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000012295128)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011555841)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011558903)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011558200)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011557500)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011556220)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011559139)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011556879)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000025019681)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011557685)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000012590216)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011557784)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000011559504)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Lolium perenne L. (BR0000014439384)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.